Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0538 ATGGAGGGGAGAGATGAGGATGTGAGGGTAGGAGCCAACAGGTATGGAGAGAGGCAACCAATAGGAACAGGTGCACAGACACAAGATGGCAAAGACTACAGAGAGACTCCTCCAGCTCCATTGTTTGAGCCTAGAGAGTTAACATCATGGTCTTTCTATAGAGCAGGGATAGCAGAATTTGTGGCCACATTCTTGTTTCTTTATGTCACTGTTTTGACTGTGATGGGTGTGGCAAAATCTCCCAATAAATGCTCCACAGTTGGTGTCCAAGGCATAGCTTGGTCATTTGGTGGAATGATCTTTGCCCTTGTCTACTGTACTGCTGGTATCTCAGGGGGTCACATTAACCCAGCTGTGACATTTGGGTTGTTCTTGGCACGCAAGTTATCTCTCACTAGGACAGTGTTCTACATAATCATGCAGTGCTTAGGAGCTATATGTGGTGCTGCTGTGGTCAAGGGATTCCAATCAAACCAATATGAGAGGCTTGGTGGTGGTGCCAACACTCTGAGTAAAGGATACTCCAAAGGTGATGGTCTTGGAGCAGAAATTGTAGGCACGTTTATTCTGGTTTACACCGTTTTCTCAGCCACAGATGCAAAACGAAATGCTAGAGACTCGCATGTTCCTATTTTAGCACCTTTGCCTATTGGTTTTGCCGTCTTTCTGGTGCACTTGGCTACAATTCCTATCACAGGGACTGGCATCAACCCTGCCAGAAGTTTAGGTGCAGCTCTTATATACAACAAGGACCAAGGTTGGGATAACCATTGGATCTTCTGGGTTGGGCCTTTTGTTGGGGCAGCACTTGCAGCTTTATACCATCAGATAGTTCTCAGGGCCATTCCTTTTAAATCAAAATGA 864 0.4583 MEGRDEDVRVGANRYGERQPIGTGAQTQDGKDYRETPPAPLFEPRELTSWSFYRAGIAEFVATFLFLYVTVLTVMGVAKSPNKCSTVGVQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRTVFYIIMQCLGAICGAAVVKGFQSNQYERLGGGANTLSKGYSKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQGWDNHWIFWVGPFVGAALAALYHQIVLRAIPFKSK* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0538 287 Pfam Major intrinsic protein 46 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra8g0538 287 ProSitePatterns MIP family signature. 114 122 IPR022357 -
Vra8g0538 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 287 IPR034294 -
Vra8g0538 287 SUPERFAMILY Aquaporin-like 45 279 IPR023271 -
Vra8g0538 287 PANTHER AQUAPORIN PIP1-4-RELATED 1 287 - -
Vra8g0538 287 MobiDBLite consensus disorder prediction 1 33 - -
Vra8g0538 287 CDD MIP 54 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra8g0538 287 TIGRFAM MIP: MIP family channel proteins 58 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra8g0538 287 PRINTS Major intrinsic protein family signature 54 73 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra8g0538 287 PRINTS Major intrinsic protein family signature 96 120 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra8g0538 287 PRINTS Major intrinsic protein family signature 133 152 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra8g0538 287 PRINTS Major intrinsic protein family signature 182 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra8g0538 287 PRINTS Major intrinsic protein family signature 218 240 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra8g0538 287 PRINTS Major intrinsic protein family signature 258 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra8g0538 287 Gene3D Glycerol uptake facilitator protein. 39 286 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0538 Vra-Chr8 8035704 8037278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0538 1 287 Major Intrinsic Protein MIP AT3G61430 82.230 1.52e-174 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0538 K09872 - gmx:100809467 571.237