Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0536 ATGGTGTTCTTATTTCCAAAGCTTCAGCCCGTTAAGCTCATATCATTATGGTTCCTTCTACTTGTAATGGCAACTTCTCTCCATGCAACACTGTCTTCATCAGTCTCACTTCAGTACACAGAAGCCAACGCTTTGTTGAAGTGGAAAGCAAGCTTTCACAACTCAACTCAAACATTGCTATCTTCATGGCATGGCAATACTTCTTGCAATTGGCTTGGAATTGCTTGTGACCACTCAGGATCAGTCTCCAACATAAATCTTACAAACATTGGATTAAGTGGTACGCTTCAAACTCTAAACTTTTCATCACTTCCAAACATTCTCACTCTTGATATCAGTTTTAACTCCTTCACTGGAAGTATTCCTCCTGAAATTGGGGTGTTGTACAAACTCACTCATCTTGATTTAAGTTACAATCATCTCACTGGACCAATTCCTTCTGAAATAACTCGGTTGGTCAATCTTCACTTTTTATATTTGGAAAGAAATGTTTTCAATGGCTCTATTCCTGAAGAAATAGGTGCATTAAGGAATTTGAGAGAGATTGTCATTCAATTTGCCAATCTCACAGGTACTATCCCAAATTCTATCGGAAAGCTATCATTCTTGTCATATATTAACTTGTGGAATTGCAGTCTTACAGGGTCTATTCCAAAATCTATAGGAAATATGACAAGTCTTGAATATCTACATTTTGCGCAGAACAACCTTTATGGACATATTCCTCACGAAATTGGAAATTTGTCAAACTTAAAGACTTTGTGGTTAGCAATTAATAACTTAGACGGTTCTATTCCTCAAGAAATAGCTAAGCTGCAGAACCTAAAGGATTTATATATATATGAAAACAATTTATCTGGAAACATTCCCGTGGAAATTGGGAAGTTGGTCAACTTGACCTGGTTATGGCTTTTTAACAATAATCTTTCGGGTTCTATTCCTCGAGAAATTGGAATGATGACAAATCTGTTTCAAATTGATTTGTCCAATAACTATTTGTCAGGTACAATCCCCCCTACAATTGGAAATCTGAGCAAATTAGGGAATTTATACATATATGGCAACCATCTCTCCGGTTCCATTCCTAATGAAGTGGGGAAACTCCATTCTCTTATGACAATCCAATTGTTAGATAATGATCTCTCTGGAACAATCCCATCTTCCATCGGTAACTTGGTCAATTTGGATTCTATTCGCCTTGACAGAAACAATCTCTCTGGACCAATTCCTTCCACTATTGGTAACTTGACAAAGCTTACCACACTTGCTTTATTCTCAAATAAGCTTAGTGGACACATCCCAATAGAAATGAATATGCTTAACAACCTGGAAAATTTGCAATTATATGACAATAATTTCATTGGTCAATTGCCTCACAATGTTTGCACTAGTGGAAACTTGATAAAGTTTACTGCTAGCAATAACTATTTCACAGGTGCAGTACCCAAGAGTTTGAAGAATTGCTCCAGCCTCAGGAGAGTTTGGCTTCAACAAAACCAATTGACAGGAAATGTGACAGAGGATTTTGGTGTATATCCAAACTTGGATTACATAGATCTGAGTGATAATAACTTTTATGGCCATCTTTCTCCAAAATGGGGAAAATGCCATAATCTCACAAGCCTCAAAATCTCCAACAATAATTTATCAGGAAGCATTCCACCAGAACTAATTCAGGCAACCAATTTGCATGTACTTGAACTGTCTTCGAATCACCTCGTAGGAGACATTCCCGAAGATTTAGGTAATTTGACAAACTTGTTCAAACTCTCTCTCAATAATAATAATCTTTCAGGGAATGTTCCTATGCAGATAGCATCATTGCTAGATCTTGACACTTTAGAGCTCGGAGCAAATGGTTTTTCTGGCTTAATTCCAACTCAACTTGGTAATTTGGTCAAGTTATTACACTTGAATTTGAGCCGAAATAAATTTACGGAAAACATTCCATCCGAGTTTGGTAAATTAAAATATGTTCAAAGTCTCGATCTTAGCATGAACATTTTGAGTGGAAAAATACCACCCGTGCTTGGACAGTTGAAAAGCTTAGAAACACTAAATCTCTCACACAATCATCTTTCAGGCGATCTCTCCAGCCTTGACGAGATGAGAAGTTTAATATCTATTGATATATCATATAATCAATTACAGGGTCCACTGCCCAACATTCCAGCCTTCAATATGACTACAATTGAAGCATTGAGAAATAATAAAGGCTTGTGTGGTAATGTCTCAGGCTTAGAACCATGTCCAACATCACCTGACAATTATGAAAATCATCATAAGACTAATAGAGTCATATTAGTATTTTTACCCATTGGTTTGGGCACTTCCATGCTAGCATTATTTGTCTTTGGAGTTTCATATCATCTTTATCATTGCTCAAAGAAAAAAGAATGTCAAGATGAAGAATCACCAGGCCAAAATCTCTTTTCGATATGGAGTTTTGATGGAAAGATGGTGTATGAGAACATAATTGAAGCCACAGAAGAGTTTGACAGTAAACATCTCATTGGAGTTGGAGGACAAGCGAGTGTTTACAAAGCTGAATTGCAAACCGGTCAAGTTGTTGCTGTTAAGAAACTCCATTCAGTACAAAACGGAGAAATGTCAAACCTTAAAGCTTTCACAAGTGAAATTAAAGCTTTGACAGAGATTCGACACCGTAACATTGTGAAGTTATACGGGTATTGTTCTCATTCCCGATACTCGTTTTTGGTGTATGAGTTGATGGAAAAGGGAAGCATAGATAAGATTTTAAAAGACGATGAAGAGGCAATTGCATTTAATTGGAAAAGGAGGGTTGATGCCATTAAAGGTGTAGCAAATGCTTTATGCTATATGCATAATGATTGTTCACCTCCAATTGTTCATCGAGATATATCAAGCAAGAATGTTCTTTTGAATTTGGAGTATGTGGCTCATGTCTCAGATTTTGGAACAGCCAAGCTTCTTAATCCTAATTCAACAAATTGGAGTTCATTCGTGGGAACTTTTGGATATGCTGCTCCAGAACTTGCATACAGAATGGAAATAAATGAAAAATGCGATGTGTATAGCTTTGGGGTATTAGCACTGGAAATAGTTTTGGGAGAGCATCCTGGAGATCTTATAAATTCATTGTTGACATCTTCATCGAATGTGATGGAGACAACACTTGATATTCCGTCATTGATGGATAAGTTAGATGAACGTCTCCAACATCCTGCAAAACCTATGGCTAAGGAGATAGAATCAATTCTAAGGATGGCAAATGCATGCTTGACTCAAAATCCTGGTTCTCGCCCTACCATGGACCAAGTTGCCAGCTACTTTTCAAAGTAG 3324 0.3706 MVFLFPKLQPVKLISLWFLLLVMATSLHATLSSSVSLQYTEANALLKWKASFHNSTQTLLSSWHGNTSCNWLGIACDHSGSVSNINLTNIGLSGTLQTLNFSSLPNILTLDISFNSFTGSIPPEIGVLYKLTHLDLSYNHLTGPIPSEITRLVNLHFLYLERNVFNGSIPEEIGALRNLREIVIQFANLTGTIPNSIGKLSFLSYINLWNCSLTGSIPKSIGNMTSLEYLHFAQNNLYGHIPHEIGNLSNLKTLWLAINNLDGSIPQEIAKLQNLKDLYIYENNLSGNIPVEIGKLVNLTWLWLFNNNLSGSIPREIGMMTNLFQIDLSNNYLSGTIPPTIGNLSKLGNLYIYGNHLSGSIPNEVGKLHSLMTIQLLDNDLSGTIPSSIGNLVNLDSIRLDRNNLSGPIPSTIGNLTKLTTLALFSNKLSGHIPIEMNMLNNLENLQLYDNNFIGQLPHNVCTSGNLIKFTASNNYFTGAVPKSLKNCSSLRRVWLQQNQLTGNVTEDFGVYPNLDYIDLSDNNFYGHLSPKWGKCHNLTSLKISNNNLSGSIPPELIQATNLHVLELSSNHLVGDIPEDLGNLTNLFKLSLNNNNLSGNVPMQIASLLDLDTLELGANGFSGLIPTQLGNLVKLLHLNLSRNKFTENIPSEFGKLKYVQSLDLSMNILSGKIPPVLGQLKSLETLNLSHNHLSGDLSSLDEMRSLISIDISYNQLQGPLPNIPAFNMTTIEALRNNKGLCGNVSGLEPCPTSPDNYENHHKTNRVILVFLPIGLGTSMLALFVFGVSYHLYHCSKKKECQDEESPGQNLFSIWSFDGKMVYENIIEATEEFDSKHLIGVGGQASVYKAELQTGQVVAVKKLHSVQNGEMSNLKAFTSEIKALTEIRHRNIVKLYGYCSHSRYSFLVYELMEKGSIDKILKDDEEAIAFNWKRRVDAIKGVANALCYMHNDCSPPIVHRDISSKNVLLNLEYVAHVSDFGTAKLLNPNSTNWSSFVGTFGYAAPELAYRMEINEKCDVYSFGVLALEIVLGEHPGDLINSLLTSSSNVMETTLDIPSLMDKLDERLQHPAKPMAKEIESILRMANACLTQNPGSRPTMDQVASYFSK* 1108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0536 1107 Gene3D Ribonuclease Inhibitor 468 534 IPR032675 -
Vra8g0536 1107 Gene3D Ribonuclease Inhibitor 535 614 IPR032675 -
Vra8g0536 1107 ProSitePatterns Tyrosine protein kinases specific active-site signature. 956 968 IPR008266 GO:0004672|GO:0006468
Vra8g0536 1107 Pfam Leucine rich repeat N-terminal domain 41 77 IPR013210 -
Vra8g0536 1107 Gene3D Ribonuclease Inhibitor 187 292 IPR032675 -
Vra8g0536 1107 Gene3D Ribonuclease Inhibitor 615 751 IPR032675 -
Vra8g0536 1107 SUPERFAMILY Protein kinase-like (PK-like) 812 1103 IPR011009 -
Vra8g0536 1107 ProSiteProfiles Protein kinase domain profile. 832 1105 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0536 1107 PRINTS Leucine-rich repeat signature 131 144 - -
Vra8g0536 1107 PRINTS Leucine-rich repeat signature 680 693 - -
Vra8g0536 1107 Pfam Protein kinase domain 834 1102 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0536 1107 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 13 180 - -
Vra8g0536 1107 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 241 359 - -
Vra8g0536 1107 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 181 269 - -
Vra8g0536 1107 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 344 1103 - -
Vra8g0536 1107 Gene3D Transferase(Phosphotransferase) domain 1 911 1107 - -
Vra8g0536 1107 SUPERFAMILY RNI-like 84 358 - -
Vra8g0536 1107 SMART LRR_typ_2 536 560 IPR003591 -
Vra8g0536 1107 SMART LRR_typ_2 272 296 IPR003591 -
Vra8g0536 1107 SMART LRR_typ_2 680 703 IPR003591 -
Vra8g0536 1107 SMART LRR_typ_2 128 152 IPR003591 -
Vra8g0536 1107 SMART LRR_typ_2 440 464 IPR003591 -
Vra8g0536 1107 SMART LRR_typ_2 224 248 IPR003591 -
Vra8g0536 1107 SMART LRR_typ_2 392 416 IPR003591 -
Vra8g0536 1107 SMART LRR_typ_2 320 344 IPR003591 -
Vra8g0536 1107 SMART LRR_typ_2 632 656 IPR003591 -
Vra8g0536 1107 SMART LRR_typ_2 561 584 IPR003591 -
Vra8g0536 1107 Gene3D Ribonuclease Inhibitor 297 467 IPR032675 -
Vra8g0536 1107 Gene3D Ribonuclease Inhibitor 38 186 IPR032675 -
Vra8g0536 1107 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 13 180 - -
Vra8g0536 1107 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 181 269 - -
Vra8g0536 1107 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 344 1103 - -
Vra8g0536 1107 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 241 359 - -
Vra8g0536 1107 Gene3D Phosphorylase Kinase; domain 1 794 910 - -
Vra8g0536 1107 Pfam Leucine rich repeat 611 667 IPR001611 GO:0005515
Vra8g0536 1107 Pfam Leucine rich repeat 106 163 IPR001611 GO:0005515
Vra8g0536 1107 ProSiteProfiles Leucine-rich repeat profile. 682 704 IPR001611 GO:0005515
Vra8g0536 1107 SUPERFAMILY RNI-like 315 706 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0536 Vra-Chr8 7931745 7935489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0536 19 1004 Receptor kinase-like Gene Family AT4G08850 43.170 0.0 746
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vra8g0536 Pkinase 2.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0536 - - gmx:100811066 1516.9