Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0519 ATGGCTATGGAACTTGTCGCTGGACCATTAATGGGAGCTATTTTCAACGTGTTGCTTGACAGGATAGCTTCCACTGAGGTTGTCAACTTCTTCAAGAACAAAAACTGTGAGAAGTTGCTCAAAAGGTTGAAAATCATCTTGCTGTCAGTCAATGTTGTTCTCAATGATGCTGAGGAAAAGCAAATGAAAAATGGGGCGGTGAAGGAGTGGCTTGAGGAACTCAAAGATGTGGCCTTTGCTGCTGAGGACCTACTTGATGAGATCTACACTGATGCAAAGATCAAGGCAAAACAGGTAAACATGCTCCACTCTGGTCATATGAGTTTTTATTGTAAAGGGGTTGAAGAGAAAATTGAAGATGTTCATGAGAGATTAGAGTTTATCATGAGACAGAAAGAAGTGCTTGATCTAAAAGTGGGTAAGGAAATCAAAATGGCACACAAGACTCCAACCTCATCTGTAATGGAAGCATCTGATGTTTTCGGAAGAGATAATGATAAAGAATTCTTGGTTGACTTGGTGTTGACTCATGATGAGAAAATAGGTGTTATTCCCATTGTTGGAATGGGAGGAATTGGAAAAACCACCTTAGCTCAACTGATATACAATGATCAAAGAGTGCAGAAGGAATTTGATCTCAAAGCCTGGATTTATGTCTCTGAGGAATTTGACATTTGTAAGATTACAAAAACCCTTTTGGAGGCTGTCACGTCTTGTAGTTGTGACGTTGAGGATTTAAATTTTCTGCAGAGGGATCTCAAAATGCATGTAATGAAGAAAAAGTTTTTGTTTGTGTTGGATGACGTGTGGAATGAAAATTATGACAATTGGGACAAGTTCAGGAGTCCATTTAAGCATGCAGGGGAACATGGAAGTAAGATTATTGTAACTACTCGAAGTTGGTGTGTTGCATCCATCATGCAGACTGTTTCACCCTATAATCTCAGAGAGTTGTCCAATGAAGATTCCTGGAATTTATTTTCAAAACATGCATTTGATTATGGTGATTCAAGTTTGCAATTGCATCAAAGTTTAGACAAAGTTGGGAGAGAAATAGTGAGGAAGTGCAAAGGTTTGCCTTTGGCTGTGAAAACACTTGCAGGACTTTTGAGGTGTAAAAGTGATAGACAAGAATGGTGTAAAGTACTGGACAGTGAGATGTGGGATTTGCAATATTCTGAGAGTAACATTCTTCCGGCTTTAAGATTAAGCTACCATTATCTCCCATCACATTTGAAGAGATGTTTTGCTTATTGTGCAATTTTCCCAAAAGATTATGAATTTGAGAAGGAGAACCTGGTTTTGTTGTGGATGGCAGAGGGTTTTCTCCAACAATCCAAAAGACATAGAAGAATTGAAGAAGTTGGCAATGAGTACTTCAGTGAACTGGTATCTAGATCATTTTTCCAGCAATCAAGGCGTGGCAAGTCATGTTTTCTAATGCATCACCTTGTAAATGATTTGGCTCAGTTTGTGTCAGGAACATTTTCTATCAGAATGGAATGTAGCAATTCTAATGAAATCAAAGAAAGAACTCGCCATTTGTCACACATTATTGCAGATAGTTCCTCATACGTAAACCTGAAAGATGTTAGCAAAGCAAATTGCTTACGCACTTTTCTGCAAATAAGACCAGTAGGTACATCCATTGATTTGTACAACAACATGCCAAATGATCTGTTAACAAAGTTAAGGTGCTTAAGGGTGTTATCTTTGGTAGGTACACATATCTATAGCTTACCTAATTCAGTAGGTGAACTAAAGCATCTCCGCTATCTGGAAGTGGCTGATACTGAGATTGTGAGGTTACCCGAATCCATCTGCAGCTTGTTCAATTTACAAACTCTCAAGCTAGTTGGATGTCACAATCTTATTGAACTGCCAGCAAGTATTCATAAGCTTGTTAACTTGCGCCATTTGGATATTAGAGGAACAAGTTTAAGGTGGATGCCATTGCAAATCAATGAGTTAAACAGCCTCCAAAATTTGAGTGACTTTTTTGTGGGAAAGGGGTGTGGATCTTCCCTCGGTGAATTGGGTGAGTTATCATGCTTACATGGAGGATTGTTCATTCATTGCCTAGAACACATTGTTAGTATCAAGGATTGTGAAAAGGCAAAGTTGAAGGAAAAGCATGGTCTTGAAAAGTTGTCTTTGGACTGGTGTGGGAATGGTGAAACTGAGAACTCTCAGAAAGAAAAAACCATACTGAACAGCCTGCAACCACATACAAATTTGAAGAAGCTGGATATCTATGACTATCCAGGAACAGAATTTCCAGAGTGGTTGGGGGATCAATCCTTCTACAATCTGGTGTCCTTAATGCTTAATGGCTGTAAATATTGCTACAAGCTGCCTCCCCTTGGACAACTTCCAATGTTGAAAGAGCTCCAGATCAGTAAATTTGAGGGACTAGTGAGTGTGGGATCTGAGTTTCTTGGAAATAGAACCTCTTATGTAAGTGATTACTTTCCTGCACTAGAAATTCTAAGGATTGAGTCTATGCCATTATGGGAGAAATGGTATCCTAATGCTGAAAATGCAGGAAGTAAAGCTTTATTTCATCTTAGAGAGTTTCATATTGGAAACTGTCCCAAACTGAGTGGGGATTTACCAGATAACCTTCCATCTTTGGCATTACTTGTAATCAGAGATTGTAAACGTCTACTCTGTTCACTTCCGAATTCTCCATCTCTGCGCGTGTTGAACATTCAGAATTGTGAGAGTCTAGAATTCCAAGTACACTCACCTCGGTGTCACCAATCACTGACATCATTGTTCTTGCATGGTAGCTGTGACTCACTCGTGTTCTTGCCTTTAGATCTCTTCCCCAACATCAAGTCTTTGGATATATGGGGATGTAAAAATCTTGAAGCACTTACTGTTTCAGAATCAGATACAAACCGTCCAAATTTGAAGTCCCTGCATTCCTTGCGCATAAGGCACTGTCCAAATTTCACATCATTTCCCAAGGGTGGATTTGCAGCATCAAAACTCACTTTGTTAACAATCAACTACTGTCAGAAGTTGAATTCTCTGCCTGAACAAATGCATGACCTTATGCCAAGTTTGAAGGAAGTTCAACTGAGGGGATGTCCCAAAATTGAGTCATCAAGTATGAGGCCACTAAGGATCAGGATTTGCAGCAAACACATGGAAGGCAAACAAAACCTCTCTGATCCTCTTTTTGCAAGGTTGAAAGGTCTGGCCACTGATCAAAGCCCCTCATCAAGTTAG 3237 0.3954 MAMELVAGPLMGAIFNVLLDRIASTEVVNFFKNKNCEKLLKRLKIILLSVNVVLNDAEEKQMKNGAVKEWLEELKDVAFAAEDLLDEIYTDAKIKAKQVNMLHSGHMSFYCKGVEEKIEDVHERLEFIMRQKEVLDLKVGKEIKMAHKTPTSSVMEASDVFGRDNDKEFLVDLVLTHDEKIGVIPIVGMGGIGKTTLAQLIYNDQRVQKEFDLKAWIYVSEEFDICKITKTLLEAVTSCSCDVEDLNFLQRDLKMHVMKKKFLFVLDDVWNENYDNWDKFRSPFKHAGEHGSKIIVTTRSWCVASIMQTVSPYNLRELSNEDSWNLFSKHAFDYGDSSLQLHQSLDKVGREIVRKCKGLPLAVKTLAGLLRCKSDRQEWCKVLDSEMWDLQYSESNILPALRLSYHYLPSHLKRCFAYCAIFPKDYEFEKENLVLLWMAEGFLQQSKRHRRIEEVGNEYFSELVSRSFFQQSRRGKSCFLMHHLVNDLAQFVSGTFSIRMECSNSNEIKERTRHLSHIIADSSSYVNLKDVSKANCLRTFLQIRPVGTSIDLYNNMPNDLLTKLRCLRVLSLVGTHIYSLPNSVGELKHLRYLEVADTEIVRLPESICSLFNLQTLKLVGCHNLIELPASIHKLVNLRHLDIRGTSLRWMPLQINELNSLQNLSDFFVGKGCGSSLGELGELSCLHGGLFIHCLEHIVSIKDCEKAKLKEKHGLEKLSLDWCGNGETENSQKEKTILNSLQPHTNLKKLDIYDYPGTEFPEWLGDQSFYNLVSLMLNGCKYCYKLPPLGQLPMLKELQISKFEGLVSVGSEFLGNRTSYVSDYFPALEILRIESMPLWEKWYPNAENAGSKALFHLREFHIGNCPKLSGDLPDNLPSLALLVIRDCKRLLCSLPNSPSLRVLNIQNCESLEFQVHSPRCHQSLTSLFLHGSCDSLVFLPLDLFPNIKSLDIWGCKNLEALTVSESDTNRPNLKSLHSLRIRHCPNFTSFPKGGFAASKLTLLTINYCQKLNSLPEQMHDLMPSLKEVQLRGCPKIESSSMRPLRIRICSKHMEGKQNLSDPLFARLKGLATDQSPSSS* 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0519 1078 Pfam NB-ARC domain 175 405 IPR002182 GO:0043531
Vra8g0519 1078 Gene3D - 404 491 IPR036388 -
Vra8g0519 1078 PANTHER OS05G0414200 PROTEIN 31 994 - -
Vra8g0519 1078 Gene3D Ribonuclease Inhibitor 527 908 IPR032675 -
Vra8g0519 1078 SUPERFAMILY L domain-like 545 993 - -
Vra8g0519 1078 PANTHER DISEASE RESISTANCE PROTEIN RP 31 994 IPR044974 GO:0006952
Vra8g0519 1078 Coils Coil 111 131 - -
Vra8g0519 1078 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 419 IPR027417 -
Vra8g0519 1078 Pfam Rx N-terminal domain 11 93 IPR041118 -
Vra8g0519 1078 Gene3D - 141 311 IPR027417 -
Vra8g0519 1078 Gene3D - 317 403 IPR042197 -
Vra8g0519 1078 Gene3D - 15 127 - -
Vra8g0519 1078 Gene3D Ribonuclease Inhibitor 963 1057 IPR032675 -
Vra8g0519 1078 PRINTS Disease resistance protein signature 183 198 - -
Vra8g0519 1078 PRINTS Disease resistance protein signature 256 270 - -
Vra8g0519 1078 PRINTS Disease resistance protein signature 356 370 - -
Vra8g0519 1078 PRINTS Disease resistance protein signature 894 910 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0519 Vra-Chr8 7245923 7249703 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0519 181 651 WRKY Transcription Factor Family AT5G45050 23.471 4.78e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0519 - - ccaj:109812375 1820.44