Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0512 ATGGCAGAAGATATGAAAATTGATCAAATTGTGGAAATTCCTGATACCCCAGATAGAATAATTGTGAGGGGTGATGATCAGAAACGTTTATGTAATCCTGAGAAGAGGAGCAGAGCTTTTAATGCTGCAGTTGAAATGAATAATAATTTGTGTACTACATTGTCCCCGTCAGAGAAATCTTATACTTCTCAAAATGCTCCCATCTTTAGGAGAGGCCAAACAATGCATTCTAGTGGAGCTGAAAAGATGGAGAAAGGGAAAAGTATATACTCCAAGGTTTCTTCTAAATCATCTCACCGTGATATTTCTGTTTTAGATTTGACTGAAGAGAATGGACCGAGCCAACAACTGAAACCAGCTTTCTCACTTGGTGCATCAAGAAATCATGCAACTGAAGACAAGAAAGCACCCAAAGCAACTATTGGAAACTCTTTGTTGCCAGCCATTTCAGATTCTTCTGTTACATCTAGAAATCCCTTCACTGGAAAGTGTAAACTTCCAGGTTCTAATACATCTGTTGATCGTGGCAAGGGTATTTCTCTGTCTCAGGATTCTCAATCCCAAAATGATAAGCAAGTGTCTTTGCCTCCATTTGTTTCCAGCTCTCCACGAGGTAGAGGGAACAAGAGATTGGTTCGAAATGGGTGTATTTTACCTGATAATATTGCTACAAGGGCTAAACAATTAGCTGAACAGAGACACCTTCAGAATGAAGATGTTGAACAGTGCCATGCTGATCATGCGCTTTCTAGCAATGCAGTGTCACCAAATAGTGTTCATGACATAGTTGCTAGAGAGAGAGGCAATGGTAAAGTTAAAGGAAAGGAAGTTCTTATTTCTCCTCCATTCAATGGACGCAGTGCTGGAACTTTTTGCACTGCTAACAGCCCTGTCATCAATCATGAAGAGGTCACTGGTACCAATAATGATACAAGAAATTCACTTCAATACCCTGGAGGACAAGGTGGTTGGAGAACTACTCGTAATGACCGGAATGCTAATCAGCACATGTGTGATGTACATGGGCATCGCATGACGAGAAATAATGGTGTTGGAAGATTTATTAATAGGCGGAATACACACATAGTGGATGGAAGAAACATTGGGAGTGGTCAAAGCAGCACACATGTACAACATAGTCCTCAATCAGATCATATAGCTCAACGAAGTTCTGTGATCATGCCAGATGTGGGCCAGTCAGCTGTTAACCGTCCTACTGCTGACATTCTGGCTAAAAGGCAAAGGAGACGTGAATCACCTGGGGAGTCATCAAGTTCCTATCCGGAAGTGGTAGAGTTGTTATCCACACCAAGGAACTCAGCAAGCTCATCCCGGAGCCATGGCTTGGATCCTGAAGTGGTTGAGTTGGTATCCACACCAAGGCACAAATCATCTGAAGATTTAGATGATAACAACAACAATAGCTTGGAAGCTCGAGCAAGACAAGTGGAAGCAGATGAGATTTTGGCACGTGAACTCCAAGAGCAATTGTATCATGATGATTTTATAGAAAACAGAGGGATTGATGAACATTTAGCGTGGGAGTTGCAGCATGCAGAGGATCTTCTGCCTACATCCATTGATAGTCACAGCATAAATCATCATGCACGGCTTCCTAGGGCAAACAGACAGCCTCGTATACCTAATCAGAATTCTTCAAGAAGGAGAGCTATGCCTGTAGTTTCTTTCTCTAATAGAGTGTCACAGTTGAGGAGTCGTGCCACAAGTAGAACTCGGACACCTAACATGTCATCTAGAGGAAGAGGCCCCCGGTTTCCTCTGGATATGGACTTAGACATGAGACTTGATATATTGGAAGCTTTAGAAAATTCAATGGGGGATTTCAGTGATATGGGAATGGCTGATGGCATCTTTAATGGGCGACGTGATTTCAATGAAAGTGATTATGAAATGTTATTGGCCCTTGACGAGAGAAATCACCAACATACTGGTGCGTCTACTAATCTGATAAATAGCCTTCCACAGTCCACCATCCAGAATGACAACATGACAGAGGCATGTGCTATATGTCTTGAGACCCCAGCCAAGGGAGAAACTATTCGCCACCTTCCCTGTTTGCACAAATTTCACAAAGATTGTATCGATCCTTGGCTCCAGAGAAAAACAACATGCCCCGTCTGCAAGTCATCAATCACCTAA 2160 0.4245 MAEDMKIDQIVEIPDTPDRIIVRGDDQKRLCNPEKRSRAFNAAVEMNNNLCTTLSPSEKSYTSQNAPIFRRGQTMHSSGAEKMEKGKSIYSKVSSKSSHRDISVLDLTEENGPSQQLKPAFSLGASRNHATEDKKAPKATIGNSLLPAISDSSVTSRNPFTGKCKLPGSNTSVDRGKGISLSQDSQSQNDKQVSLPPFVSSSPRGRGNKRLVRNGCILPDNIATRAKQLAEQRHLQNEDVEQCHADHALSSNAVSPNSVHDIVARERGNGKVKGKEVLISPPFNGRSAGTFCTANSPVINHEEVTGTNNDTRNSLQYPGGQGGWRTTRNDRNANQHMCDVHGHRMTRNNGVGRFINRRNTHIVDGRNIGSGQSSTHVQHSPQSDHIAQRSSVIMPDVGQSAVNRPTADILAKRQRRRESPGESSSSYPEVVELLSTPRNSASSSRSHGLDPEVVELVSTPRHKSSEDLDDNNNNSLEARARQVEADEILARELQEQLYHDDFIENRGIDEHLAWELQHAEDLLPTSIDSHSINHHARLPRANRQPRIPNQNSSRRRAMPVVSFSNRVSQLRSRATSRTRTPNMSSRGRGPRFPLDMDLDMRLDILEALENSMGDFSDMGMADGIFNGRRDFNESDYEMLLALDERNHQHTGASTNLINSLPQSTIQNDNMTEACAICLETPAKGETIRHLPCLHKFHKDCIDPWLQRKTTCPVCKSSIT* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0512 719 SUPERFAMILY RING/U-box 663 718 - -
Vra8g0512 719 MobiDBLite consensus disorder prediction 565 592 - -
Vra8g0512 719 MobiDBLite consensus disorder prediction 57 72 - -
Vra8g0512 719 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 477 717 - -
Vra8g0512 719 MobiDBLite consensus disorder prediction 363 429 - -
Vra8g0512 719 MobiDBLite consensus disorder prediction 363 397 - -
Vra8g0512 719 MobiDBLite consensus disorder prediction 149 201 - -
Vra8g0512 719 MobiDBLite consensus disorder prediction 149 211 - -
Vra8g0512 719 MobiDBLite consensus disorder prediction 303 329 - -
Vra8g0512 719 SMART ringv_2 673 715 IPR011016 GO:0008270
Vra8g0512 719 Pfam Ring finger domain 673 715 IPR001841 -
Vra8g0512 719 CDD RING-H2_PA-TM-RING 674 715 - -
Vra8g0512 719 PANTHER - 477 717 - -
Vra8g0512 719 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 640 719 IPR013083 -
Vra8g0512 719 ProSiteProfiles Zinc finger RING-type profile. 674 715 IPR001841 -
Vra8g0512 719 MobiDBLite consensus disorder prediction 57 95 - -
Vra8g0512 719 MobiDBLite consensus disorder prediction 565 585 - -
Vra8g0512 719 SMART ring_2 674 714 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0512 Vra-Chr8 7111371 7119748 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0512 3 719 C3H Transcription Factor Family AT1G04790 33.023 4.54e-75 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0512 - - gmx:100796218 893.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0512 8 7111371 7119748 Vra8g0512 8 7111371 7119748 ECH