Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0509 ATGGCGGTCGTTTCTTCTTCTTCTTCTTCTTCTACTTCCATGTGGGTCTTCTTTTTCTTCCTTCTGCCGCTGTTCATTCACCTACAAGCAACCATGGCCACCACCACTCCGCAGATCTCTCACCTCAGGGCACTGGAGGCTGAAAAGTTAAATGAACAAGCTGCAGTGGCTAACCCAGAGGAAGTGGTTTCAATGGTTGAGATGAGCATCCAGAATAGTACACAGAGAAGGAATCTGGGGTTTTTCTCTTGTGGAACTGGTAACCCCATTGATGATTGCTGGCGTTGTGACCCCAACTGGCAGCGCAACAGGAAGCGTCTTGCAGATTGTGGCATTGGATTCGGCAGAAATGCCATTGGTGGTCGCGATGGAAAGTTCTATGTTGTGACTGACCCCAGGGATGATGACCCTGTGAACCCCAAACCTGGCACTCTTCGTCATGCTGTGATACAGGATAGGCCCTTGTGGATTGTGTTCAAGAGGGACATGGTTATTCAGTTGAAGCAAGAGCTAATCATGAACAGCTTCAAGACCATTGATGGAAGAGGAGCCAATGTGCACATTGCTAATGGGGCATGTATCACAATTCAGTTTGTTACCAATGTCATCATCCATGGCCTGCATATTCATGACTGCGTACCTACCGGAAATGCCATGGTGAGGAGCTCCCCCACCCACTTTGGGTGGAGGACAATGGCTGATGGAGATGCCATCTCCATATTTAGCTCAAGCCACATTTGGGTTGACCACAACTCCTTGTCCCACTGTGCTGATGGCCTTGTGGATGCTGTCTTGGGCTCAACAGCCATTACTATTTCAAACAACCACTTCACTCACCACAATGAGGTGATTCTGCTGGGCCACAGTGACTCTTACACAAGAGACAAGCTCATGCAAGTGACCATCGCATACAACCATTTCGGAGAGGGACTTATCCAGAGAATGCCACGGTGTAGACATGGATATTTTCACGTGGTGAACAATGACTATACTCACTGGGAAATGTATGCCATTGGTGGAAGTGCTAACCCCACCATTAACAGCCAGGGAAACCGATACAATGCTCCTGTTAACCCTTTTGCAAAGGAGGTGACTAAGAGAGTGGAAACAGCAGAAAGTCAGTGGAAGGGTTGGAATTGGAGGTCTGAGGGAGATTTGTTGCTGAATGGTGCCTTTTTCACACCATCAGGAGCCGGAGCCTCAGCCAGCTATGCCAGGGCCTCAAGCTTAGGTGCCAAATCTTCTTCCATGGTTGGTTCCATGACTTCCAATGCTGGTGCACTAGGTTGCAAAAGAGGCCATCAGTGCTAG 1311 0.4874 MAVVSSSSSSSTSMWVFFFFLLPLFIHLQATMATTTPQISHLRALEAEKLNEQAAVANPEEVVSMVEMSIQNSTQRRNLGFFSCGTGNPIDDCWRCDPNWQRNRKRLADCGIGFGRNAIGGRDGKFYVVTDPRDDDPVNPKPGTLRHAVIQDRPLWIVFKRDMVIQLKQELIMNSFKTIDGRGANVHIANGACITIQFVTNVIIHGLHIHDCVPTGNAMVRSSPTHFGWRTMADGDAISIFSSSHIWVDHNSLSHCADGLVDAVLGSTAITISNNHFTHHNEVILLGHSDSYTRDKLMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPVNPFAKEVTKRVETAESQWKGWNWRSEGDLLLNGAFFTPSGAGASASYARASSLGAKSSSMVGSMTSNAGALGCKRGHQC* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0509 436 SUPERFAMILY Pectin lyase-like 62 430 IPR011050 -
Vra8g0509 436 SMART amb_all 162 359 IPR002022 -
Vra8g0509 436 PRINTS Pollen allergen Amb family signature 110 127 IPR018082 -
Vra8g0509 436 PRINTS Pollen allergen Amb family signature 134 159 IPR018082 -
Vra8g0509 436 PRINTS Pollen allergen Amb family signature 170 186 IPR018082 -
Vra8g0509 436 PRINTS Pollen allergen Amb family signature 234 255 IPR018082 -
Vra8g0509 436 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Vra8g0509 436 PRINTS Pollen allergen Amb family signature 336 355 IPR018082 -
Vra8g0509 436 PRINTS Pollen allergen Amb family signature 378 402 IPR018082 -
Vra8g0509 436 PRINTS Pollen allergen Amb family signature 407 430 IPR018082 -
Vra8g0509 436 Pfam Pectate lyase 169 351 IPR002022 -
Vra8g0509 436 Gene3D - 87 429 IPR012334 -
Vra8g0509 436 PANTHER PECTATE LYASE 18-RELATED 42 433 IPR045032 GO:0030570
Vra8g0509 436 PANTHER PECTATE LYASE 42 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0509 Vra-Chr8 7002358 7007783 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0509 45 436 Polysaccharide Lyase AT4G13710 82.872 0.0 711
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0509 K01728 - gmx:100781845 800.431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0509 8 7002358 7007783 Vra8g0509 8 7002358 7007783 ECH