Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0490 ATGCATGACATTTGTCTCAACATGCCCCCAATGGTTCAGAACTTCGACCCTGAGGATCTCTTCTCAAGGCGTTGCATTTGGGTGAACGGACCTGTGATAGTAGGTGCTGGTCCTTCGGGTCTTGCAGTGGCTGCAGGCCTCAAAGACCAAGGTGTTCCATTCATAATCCTTGAGAGAGCAAACTGCATTGCCTCTCTCTGGCAAAACCGCACCTATGATCGCCTCAAGCTTCACCTTCCCAAACAGTTCTGCCAGCTTCCAAACTTCCCTTTCCCTGAGGACTTCCCTGAGTACCCCACAAAGTTTCAGTTCATAAGCTACCTTGAGTCCTATGCCAACCACTTCAACATAGCCCCACAGTTCAATGAAACAGTGCAGTCTGCAAAGTACGATGAGACCTTTGGCCTTTGGAGGGTCAAGACCATCAGCAGGAGGAAAGGGCCCTCCTCAGCTGCTCAGTGTGAGGTCGAGTACATTTGCAGGTGGCTTGTGGTTGCCACCGGCGAAAACTCAGAGAAAGTGGTGCCTGAGTTTGAAGGGTTGGGAGAGTTTGGTGGCCGCGTCATGCATGCTTGTGAGTATAAATCTGGAGAGGGTTTTTCTGGACAGAAAGTGCTTGTTGTTGGGTGCGGGAATTCAGGCATGGAGGTCTCGCTTGATCTATGTAACCACAATGCAAAACCTTCAATGGTGGTTAGAAGCTCGGTTCATGTTTTACCAAGAGAGGTTTTTGGGAAATCTACTTTTGAAGTTGCTGTGATGTTGATGAAGAGGTTACCTCTGTGGATGGTTGATAAGATACTGCTGATTCTGGCACGTTTGATTTTGGGGAATGTTGAAAAGTATGGTCTGAAAAGGCCTTGTGTGGGTCCTTTGGAATTCAAGCACACCGCAGGGAAGACCCCTGTGTTGGACATTGGGGCCCTTGAGAAAATTAGATCTGGCAAAATCAAAGTGGTTCCTGGAATCACAAGGTTCTTGCCAGGGAAAGTTGAACTTGTTGATGGCCAAGTTCTTCAGATTGATTCTGTGGTTCTTGCCACTGGTTATCACAGCAATGTACCATCATGGTTGAAGGAAAATGAGTTCTTTTCAAACGATGGAACTCCAAGAAACCCTTTTCCAAATGGGTGGAAAGGAAAAGGTGGTCTTTATGCAGTTGGATTCACAAGGAGAGGCCTTTCTGGTGCATCTTTGGATGCAATTAATGTGGCTCATGACATTGCCAAGAGTTGGAAAGAAGAAACAAAACAGAAGAGGAAAACTGTGGCAGCACGTCACAGGAGGTGCATATCACACTTCTAA 1305 0.4705 MHDICLNMPPMVQNFDPEDLFSRRCIWVNGPVIVGAGPSGLAVAAGLKDQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPEYPTKFQFISYLESYANHFNIAPQFNETVQSAKYDETFGLWRVKTISRRKGPSSAAQCEVEYICRWLVVATGENSEKVVPEFEGLGEFGGRVMHACEYKSGEGFSGQKVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVFGKSTFEVAVMLMKRLPLWMVDKILLILARLILGNVEKYGLKRPCVGPLEFKHTAGKTPVLDIGALEKIRSGKIKVVPGITRFLPGKVELVDGQVLQIDSVVLATGYHSNVPSWLKENEFFSNDGTPRNPFPNGWKGKGGLYAVGFTRRGLSGASLDAINVAHDIAKSWKEETKQKRKTVAARHRRCISHF* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0490 434 Pfam Flavin-binding monooxygenase-like 33 355 IPR020946 GO:0004499|GO:0050660|GO:0050661
Vra8g0490 434 Gene3D - 30 420 IPR036188 -
Vra8g0490 434 SUPERFAMILY FAD/NAD(P)-binding domain 204 417 IPR036188 -
Vra8g0490 434 PRINTS FAD-dependent pyridine nucleotide reductase signature 31 50 - -
Vra8g0490 434 PRINTS FAD-dependent pyridine nucleotide reductase signature 160 178 - -
Vra8g0490 434 PRINTS FAD-dependent pyridine nucleotide reductase signature 204 222 - -
Vra8g0490 434 PANTHER INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA3-RELATED 15 432 - -
Vra8g0490 434 PRINTS Pyridine nucleotide disulphide reductase class-I signature 30 52 - -
Vra8g0490 434 PRINTS Pyridine nucleotide disulphide reductase class-I signature 163 172 - -
Vra8g0490 434 PRINTS Pyridine nucleotide disulphide reductase class-I signature 204 229 - -
Vra8g0490 434 SUPERFAMILY FAD/NAD(P)-binding domain 32 236 IPR036188 -
Vra8g0490 434 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 15 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0490 Vra-Chr8 6711112 6714058 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0490 K11816 - gmx:100818345 827.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0490 8 6711112 6714058 Vra8g0490 8 6711112 6714058 ECH
Vra3g0327 3 3873022 3875211 Vra8g0490 8 6711112 6714058 PCT