Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0481 ATGTTGAGAATGAATAAAGGGTCACTTGATTACTGGAGGAATTACTTTGGAGCTGCGAACTCTGACATATTTGGCATCATTGACCATGCGATCATGGTGGCTGCTTCTGATTGCCCCGAGGAGTTCAGGATGAGGAGGGATGGGATTGCAGAGAGGTTGTTTTCTAGCAGACTGAGTCGATGTTTGGGGTGTGAGCGGGTTGAATTGTCTGTCCCAGTGGATGATGATGGTGGTGGTTGTAAGAATGGCTTTGAAGGGACCGGAGCTGAGTTTGAGTCTGAAGCAGGCGCAAGTAAAGAGAGCAAGGTCAATAGTGCCAGCGTTGATGATCCTGGAGTGACGAACACGAACCGAGCTAGCAATTACAGCTATGGGGAAGCTGAGGCGTTGACTGATGAGATTGAAGAAGAGTCACAATATGTTGAAGAGGTATTCAGGATCAAGGATGTTTTGCTTAACTGTGAAGAAGAGTCTGATTCAGTTTTGTTTGATTCATTGAGAAGGCTTCAGCTGATGGAACTCACAGTGGATCTTTTGAAGGCAACTGAGATTGGAAAGGCTGTCAATCCTCTTCGAAAGCATGGATCAAGTGACATTTGTCTACTCGCGCGGACTCTTATCGAAGGCTGGAAGGAAATGGTGGATGATTGGGTCAAGGCTACCACAGCTATTGCAGGTTCAGAAGGTACTCCAGATTCAGTAAATCCATCTGTTATTGATGATGAAGAAGGTCTTCCATCACCTCCTATGGATGAAGGGGCTTTATTTGCCCCTCCAACAGGTTCTATGGAACTCTCCCAGTTCTTCGATGGCATGGATGATGATGGAAATCCTCGACATAGTGGGGAATTCATGAAAAACCGTGATCATGGAAGAAGTCCATCTCTGAAGAGGAAACCTCAGGCATCAAATGGGGCAAACATTGTTGCCAAGGACGGCGGAAAAGGTCAGCAAGCAAAGAAAAATGAGGTTGCTGTGAGGCCGAATAAACCAGCTATCAGTGATTCTGGTCCTGGCAGACCACCAAAATCAACCATGCAGAAGAAAGGCTCTATTGAGCCGAAGGTGCAACAGAATACAGTGAAGAATACTATCCCAAAAAATCCTCATGTTCGTCAGCTAGATAAACCCAGGTGTTCGGATGATGCTTCAGTCCAAGTGAAGTTAGAAGCCAGTAAGAGGAAACTTCAGGAGCGGTATCAACAAGTTGAAAATGCTAAGAGGCAGAGGACAGTGCAGGTTATGGAGTTGCATGACCTCCCAAAGCAAGGTATTGGCCACCGGAATCCGCATGTGAAACCCGGAAATCAAAAGAGGCAATGGGGTCATGGACGAAGATAG 1341 0.4631 MLRMNKGSLDYWRNYFGAANSDIFGIIDHAIMVAASDCPEEFRMRRDGIAERLFSSRLSRCLGCERVELSVPVDDDGGGCKNGFEGTGAEFESEAGASKESKVNSASVDDPGVTNTNRASNYSYGEAEALTDEIEEESQYVEEVFRIKDVLLNCEEESDSVLFDSLRRLQLMELTVDLLKATEIGKAVNPLRKHGSSDICLLARTLIEGWKEMVDDWVKATTAIAGSEGTPDSVNPSVIDDEEGLPSPPMDEGALFAPPTGSMELSQFFDGMDDDGNPRHSGEFMKNRDHGRSPSLKRKPQASNGANIVAKDGGKGQQAKKNEVAVRPNKPAISDSGPGRPPKSTMQKKGSIEPKVQQNTVKNTIPKNPHVRQLDKPRCSDDASVQVKLEASKRKLQERYQQVENAKRQRTVQVMELHDLPKQGIGHRNPHVKPGNQKRQWGHGRR* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0481 446 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 6 445 - -
Vra8g0481 446 Pfam TFIIS helical bundle-like domain 166 214 IPR017923 -
Vra8g0481 446 Coils Coil 386 413 - -
Vra8g0481 446 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 132 225 IPR035441 -
Vra8g0481 446 MobiDBLite consensus disorder prediction 422 446 - -
Vra8g0481 446 MobiDBLite consensus disorder prediction 91 119 - -
Vra8g0481 446 MobiDBLite consensus disorder prediction 273 296 - -
Vra8g0481 446 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 139 228 IPR035441 -
Vra8g0481 446 MobiDBLite consensus disorder prediction 98 119 - -
Vra8g0481 446 MobiDBLite consensus disorder prediction 226 384 - -
Vra8g0481 446 CDD TFIIS_I 142 215 - -
Vra8g0481 446 MobiDBLite consensus disorder prediction 369 384 - -
Vra8g0481 446 MobiDBLite consensus disorder prediction 350 367 - -
Vra8g0481 446 ProSiteProfiles TFIIS N-terminal domain profile. 142 217 IPR017923 -
Vra8g0481 446 SMART TFS2_5 141 216 IPR003617 GO:0005634
Vra8g0481 446 MobiDBLite consensus disorder prediction 432 446 - -
Vra8g0481 446 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 6 445 IPR044805 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vra8g0481 Med26 7.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0481 - - gmx:100775579 756.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0481 8 6581065 6586515 Vra8g0481 8 6581065 6586515 ECH