Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0469 ATGGCTATGTTTGACCTCAATGTTGACATCAACCATGCTGATGCAGATTCTGGCTCGAGCTGTGCTCAAAAGGAGGTGAAACTGCAGAGTTTTCCGACTGATATCTCAGATTCCAGAACCTCCAACTCCTCTGTGTGGAATCCTGCAGATGAAGATTCCTCAAACAATTCCTCTCCCCTGATTTTTGACATACTGAACAAAGAGAGGGGTGGCTCAGAGTTCAACATGGAGCAAAACATGGCACAGAAGGGAGAGATGGCGACAAGGACCTTTTTCCCTGTGACTTCTTCTGATAAAGGAGGAAGAGTGCCTGATTTCAAATCTGGGTTGTGGGGGAGTACTCAATTGTTGAACCAGTCCTTTCCTGAATCTGATGAAAAACAGAATGAACTGAGAACCTTACAGCAGAAGCTACCACATGTGAGGAAAAACAGGAGAGGACCAAGGTCTCGCAGTTCCCAATACCGAGGTGTTACCTTCTACCGCAGGACTGGTAGATGGGAGTCACATATTTGGGATTGTGGGAAGCAGGTCTATCTGGGTGGATTTGACACTGCTCAAGCTGCTGCAAGAGCTTACGACAGGGCTGCTATTAAGTTTCGTGGAGTAGATGCTGATATAAACTTTAGTCTGAGAGATTATGAGGAGGATTTGAAGCAGATGAGAGGTTTGAGTAAGGAAGAGTTTGTGCTTGTTCTTCGTCGACAAATCAATGGAATCTCGAGGAGAAACGCAACTTACAAAAGTGCATTAGCTCTTCACAAAGCTGGTCAAGGAGAGCCAAGTATGGGACCATTTCTTAGCAAGACATTTTATCCCAAGTCTGAAGGAAAAGTGGAGAGCAGTTTTAGAGCTTTTTCCTATAAGGAAAAAATAATTGGAAATTCCAGTATAGCAGGAACTTGCCATGATCTTGATTTGAGCCTGGGGATTTCTACATCTTCTAAAAAGTTGAAGAATTGTGATTATGGTGGAGACTATTCCTTTGGATGTATGCCTTGTAAGATACCCCAGGAAATAGGAACAATGTGTGAGGAGAAGAGCATGGTGGAGAGAATGAGAAGTGTTCATCTGCAAAAGTTTTGCAGCAATGGCAGCATTGGCTCAAGGCCATTGCAATCAAATGCAGCATCATCAGGATTCGTCACATATCAATTGTGCCAACACAACTCATCATTAACTCTCCAAGGTTGTGGTGTCACACTCGTAGATCAAATCAAACCACTCTAA 1230 0.4358 MAMFDLNVDINHADADSGSSCAQKEVKLQSFPTDISDSRTSNSSVWNPADEDSSNNSSPLIFDILNKERGGSEFNMEQNMAQKGEMATRTFFPVTSSDKGGRVPDFKSGLWGSTQLLNQSFPESDEKQNELRTLQQKLPHVRKNRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAQAAARAYDRAAIKFRGVDADINFSLRDYEEDLKQMRGLSKEEFVLVLRRQINGISRRNATYKSALALHKAGQGEPSMGPFLSKTFYPKSEGKVESSFRAFSYKEKIIGNSSIAGTCHDLDLSLGISTSSKKLKNCDYGGDYSFGCMPCKIPQEIGTMCEEKSMVERMRSVHLQKFCSNGSIGSRPLQSNAASSGFVTYQLCQHNSSLTLQGCGVTLVDQIKPL* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0469 409 CDD AP2 153 209 IPR001471 GO:0003700|GO:0006355
Vra8g0469 409 ProSiteProfiles AP2/ERF domain profile. 154 210 IPR001471 GO:0003700|GO:0006355
Vra8g0469 409 MobiDBLite consensus disorder prediction 32 59 - -
Vra8g0469 409 Pfam AP2 domain 154 202 IPR001471 GO:0003700|GO:0006355
Vra8g0469 409 SUPERFAMILY DNA-binding domain 153 211 IPR016177 GO:0003677
Vra8g0469 409 Coils Coil 124 144 - -
Vra8g0469 409 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SMZ-RELATED 3 387 - -
Vra8g0469 409 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 387 - -
Vra8g0469 409 SMART rav1_2 154 216 IPR001471 GO:0003700|GO:0006355
Vra8g0469 409 Gene3D AP2/ERF domain 153 212 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0469 Vra-Chr8 6389622 6393650 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0469 3 269 AP2-EREBP Transcription Factor Family AT2G28550 50.909 6.74e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vra8g0469 AP2 2.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0469 K09284 - gmx:100776138 549.28