Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0463 ATGAATGCTTCAAAGTCCTCAGTGAAAAGGCATGAAGGTTGCTCCCGTAGCCCTTCCTCTGGCAAAGAATTGAGTGAAGTGTTTGTGAAACGCAGGAAGGTGAGTCGAGCATTGGGAACATTCAGGAACTTGGTCGACAAACTAATGCATCAGTACAAAGTGTACGAACCTGAGAATCCTAGGGCTAAGAATAAAGCTCTGATGGAAGCAGCAATGACAATGAGAAGAGAACATCAATGGGAGAATACTCAAAAGTGCGTGGGACATATACTTGGAATAGATGTGGGTGATATTTTTCAATACTGGGTTGAACTCAATGTCATTGGCCTCCATAGGCAGTTTTGGCATGGAATTGATTATAAGATAATGGACAACAGCTTGTTTGCCACAAGCATTGTCGTAACAGATCGCTATGATAATACTAGAAGATCTAATGGTACCTTGGTTTATGAAGGTGAAGGAGGAAATCCTGCCGTTGGGAAAAATGTTTCACTTCGTGATCAAACCCTGGAAGGAGGAAATTTGGCACTTAAAAATAGCATGCAAGCTAGAAGTCCAGTGAGAGTTATATTCAAAGTTTGTGGAAAGTTTGATGGTGCATTCGGTTACAGTAACAATAATTCTCATTATTCATATGTTTATGATGGTTTGTATTTGGTGGATACAATGAACATAGAAAGAGGGAGATATGGAAAGCTTGTGTTCAAGTTTGGACTGAATAGAATTTTAGGACAACCTGAAACTTGTGTTTCCCTTAAGGACCATGGTGAAAATTCAAGGCAACTTGCAAATTTTGGTCCTAGGAAGAAACTCAAGCCGAAAGTCTGTGTTGCCGAAAAGGAGGTTGTTCGAGTTAAAGATCTTTCAAATGGTCGGGAGAAGTTTACTATTAGGGTGGTGGCTCCAATTGATTATGTTCAGCTACCCACATCCTTTGATTATGTTGTAAGTAACATTTACTCACAGAAGTTCGAGCAGACAATTCTTTGTGGCTGTGATTGTGCTGATGGGTGTGTTGACAAAGAAAATTGTGTCTGCTTCAGGAAGAAAAAGGGTAGCAAAATGCCGAATGGTTCTAATAAAAGACTTGCCTCTGAGATGGAATCATCACTTATATATGAGTGTGGCCCATATTGCAAGTGCTCCTCTTCTTGCATCAACCGAGTAACTCAGAATGGTATTCAGTTTCAGCTAGAAATCTTCAGGACCGTAGAGAAAGGTTGGGGTGTTAGAACACGCTCTTTCATTCCCTCTGGAAGCTTTGTATGTGAGTATATTGGAGAAGTCAGTGACTATATGGAGGCTAGATGGAGGCTAGATAATGACTATATATTTCACATGGGTGTTGGAAAGGTCTTCATCAATGCAAGCAAATGTGGAAACGTTGGAAGATTCATAAATCATAGTTGTGCTCCAAATCTCTGTATCAAAGATGTTATGTATGATCGCAGTGACAAGAATCTTCCTCACAAAATGCTGTTTGCTTTAAAGGACATTCCTGCTGGTAGAGAGCTGACTTATGACTATAATTCCTTCAATGGAAAATTTATCAAGTGTAGGAGTAATAGCTGCTGCTGTGGAACACCGGAATGCAATGGACAGATCTACATTTAA 1614 0.4002 MNASKSSVKRHEGCSRSPSSGKELSEVFVKRRKVSRALGTFRNLVDKLMHQYKVYEPENPRAKNKALMEAAMTMRREHQWENTQKCVGHILGIDVGDIFQYWVELNVIGLHRQFWHGIDYKIMDNSLFATSIVVTDRYDNTRRSNGTLVYEGEGGNPAVGKNVSLRDQTLEGGNLALKNSMQARSPVRVIFKVCGKFDGAFGYSNNNSHYSYVYDGLYLVDTMNIERGRYGKLVFKFGLNRILGQPETCVSLKDHGENSRQLANFGPRKKLKPKVCVAEKEVVRVKDLSNGREKFTIRVVAPIDYVQLPTSFDYVVSNIYSQKFEQTILCGCDCADGCVDKENCVCFRKKKGSKMPNGSNKRLASEMESSLIYECGPYCKCSSSCINRVTQNGIQFQLEIFRTVEKGWGVRTRSFIPSGSFVCEYIGEVSDYMEARWRLDNDYIFHMGVGKVFINASKCGNVGRFINHSCAPNLCIKDVMYDRSDKNLPHKMLFALKDIPAGRELTYDYNSFNGKFIKCRSNSCCCGTPECNGQIYI* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0463 537 ProSiteProfiles Post-SET domain profile. 520 536 IPR003616 -
Vra8g0463 537 SUPERFAMILY PUA domain-like 70 252 IPR015947 -
Vra8g0463 537 SMART set_7 396 516 IPR001214 GO:0005515
Vra8g0463 537 Gene3D - 69 263 IPR036987 -
Vra8g0463 537 Gene3D SET domain 264 522 IPR046341 -
Vra8g0463 537 SUPERFAMILY SET domain 275 518 IPR046341 -
Vra8g0463 537 ProSiteProfiles SET domain profile. 396 510 IPR001214 GO:0005515
Vra8g0463 537 Pfam SET domain 407 510 IPR001214 GO:0005515
Vra8g0463 537 Pfam SAD/SRA domain 87 245 IPR003105 -
Vra8g0463 537 Pfam Pre-SET motif 289 388 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Vra8g0463 537 ProSiteProfiles Pre-SET domain profile. 330 393 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Vra8g0463 537 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6 5 533 - -
Vra8g0463 537 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 5 533 - -
Vra8g0463 537 MobiDBLite consensus disorder prediction 1 21 - -
Vra8g0463 537 SMART G9a_1 83 245 IPR003105 -
Vra8g0463 537 SMART preset_2 285 380 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Vra8g0463 537 ProSiteProfiles YDG domain profile. 88 241 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0463 Vra-Chr8 6285776 6289051 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0463 66 535 Su(var)3-9 homologs AT1G73100 34.375 3.49e-76 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vra8g0463 SAD_SRA 6.6e-37 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0463 - - vun:114192587 943.34