LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra8g0461	ATGGGCGTTGAGAACTACCACGTGATTGAACTCGTAGGCGAGGGTTCCTTCGGGAAGGTATACAAGGGAAGGCGCAAGCACACGGGGCAGACCGTTGCAATGAAGTTCATAATGAAGCATGGGAAAACTGAGAAGGATATTCACAATTTAAGGCAGGAAATCGAGATCTTAAGAAAGTTGAAGCATGAAAATATCATTCAAATGCTTGATTCCTTTGAAAGCCCGCAAGAATTTTGTGTCGTTACAGAATTTGCACAAGGTGAGCTATTTGAGATTCTTGAGGATGATAAGTGCCTTCCGGAAGGCCAAGTTCAAGCGATTGCAAAGCAATTGGTAAAAGCTTTACACTATTTGCATTCCAATCGGATCATCCATCGCGATATGAAGCCTCAAAATATTCTAATTGGTGCTGGATCTGTTGTCAAGCTTTGTGATTTTGGGTTTGCACGTGCAATGTCTACAAATACAGTTGTTTTGCGATCTATAAAAGGCACTCCGTTGTATATGGCTCCAGAGCTTGTACGTGAACAACCTTACAACCACACTGTAGATTTATGGTCTCTTGGCGTCATACTGTATGAGTTATTTGTTGGCCAACCACCATTTTACACAAATTCTGTATATGCTCTCATCAGACACATTGTTAAGGATCCTGTTAAATATCCTGATCGCATGAGTCCAAATTTCAAAAGCTTTTTAAAGGGTTTGCTTAACAAGGCACCGGAAAGTCGTCTAACTTGGCCGGCTCTTCTTGAGCACCCATTTGTTAAAGAAACCTCTGATGAACATGAGGCCAGGGAATTGCGAGAGATAAATGGTTCACGCATGCGCAGTGAAGCAGAACGGATGGTTGAAGGGAAAACCATTCAAACTCCAACAGGCAAAAACAATCATATGGCAGGTATGGAGGGGCATATTGCTTCACCGCTTCAGAGTGAAGCTCAGTTAAATGGTCATAACATAGACAGAACTAACTCTTCAGTGCTTGATGATTCTCCGGGAATTTCAAATCAAAATATCGTAGAGTCAGGCTGCCAAAGATTGGACAGACTTGAAAATAACTCTCGCACAGTAAAAAATGCAAAACTAATTGGTCAAGATAATGAAGCGTTGGGACATATTCTGCTACCACTGCAAAAATGGTCAAAAGGATCTCAAAATATTTGCAGTGATCAAGATGTTCCTCAATCAAATCAGTCATTGAGGATTCTCTCAAACCTAGTTGCAGCTGGTGCCTTCAATTCTAGTGGACGAATAGATGAACTAATAAGAGAGCTTCTTGTGTTTATTGGAGCCGTTATAGCCATTAAGTCCTCTGAAGTTACTGACATGATAGCAAAGGGTTTCTCTATCACTAAGATTTTGCTAGATAATGGCGGAAGTTGCTCTTCAAGATCTTATCTAAGTCACTGGGTTGAATTTGTTGAGATCTATTCTCAGGTTGTAGCATCAAATAATGATGCCTCTGGAAGAGTTCTCTATGAATCCAGTGCTTGCATTACAGTCATGCTGTCTGGAGTTGCTCAGGTGCTCATGTCATCTCAAATTTCAGGCCAAGAGACATCGAATGAAACAGCTAACAGAATTTTAGACCATGCAAAAACGATGGGTTTAGTGGACCATCTATGTTTGTGTTTAGCCACATCTGGATCAAGTCTTATTTCAGGTTCTTCCAACATGCTAAGGGCTGCTTCTGAAGCATGCAGAGCTATCTGGTCTTTGATTAATGCACTGGATATTCTTTTTATGAAAAAATGTGCCATTTTGTTTCCCATTAATGCATTGCGCAGTCATTCTTTGCATAGGATGGAAGTTTTGCAACATGAGCAAAATCTCTTTGACAAAGCAGATTCAACAAAAATTGTTGATGCAATGACAAGAGCATTTCTTAGATCTAAAGCTGTCCAGGTTGCTGTTTACTATTGTTTTCACCAACGACTTGAGTCTGCAATGAATTGTTGTCTTCAGCTTTTGTCAAGGTGCTGCCTACATAATGAAATTGTTCCAGCTGTACTTTGTGGTCTTCCCAGTTCCCTTCCGGTGACTACTGTTGTTAGTGGGGGCGGTGATGGAACTATTGTTTCAGAAGTTTTCACTGTTTTATCATTATGCAGTTCCTCTGTTAACAAAGACGCACAGAGTATAGAACCAAGTAATGTAAAGTTCAAATTAACAAATCCTTCTGCTCTGGTTCGTCATTCATGTCTTGTTCTCGCAATAATTGCTCAGTGTTTGAAGTCAACGGGAAGAAATTCAGCAATGTTTATGCTCACTACCGCACCAAAGAAGCAGCTTGCTCGACTTTCGGTGCTTTCGCATCATATTACTCATGATGATAAAATAAAAGCCTCCATCGAACCTCAAAGTGCATCAGCCATGTTGGCTTTGGCATCCATTCTGTCTCTCGAATCTGGGGCTTTAGTTGAGTCTCCAATATCTGAAATTGCAATACCTTTAATTCCTCGAACCTCTACACTCAGTGATCATCTTAAATTTTCATGTGGCAATGAAAATGAATTGGACCCTTGCAACTTCAGTGGGAAACTCTCTTATTGGCAAGGGGTAAGAGATGGGTATGTTGGTCTTTTAGATTCCAGAATCAAGTGGGGAGGACCGTTGGCTGTTCAGCAGTTGTGTGCAAGTGGCATTCCTCTACAAATTATGGGCTTATTAGGCAGTGATGTTTTAGACGCATCTCATGGAACCGACCATCAAAATGATAGAGTTGGATTGTCTCCAATTGGTGTTGTATGGACAATTTCATTATTATGTCATTGTCTTTCTGGAGGTGCTATGGTATATCGTCAAATTTTGATTAGGAATGAACATATTAAGCTCATTTCTAACTTGATATGTGATGTTCATATCAAGTTAGTGAAATGCTGGATCGGACCTGGTGGAGGGAAAGCAGGAGTCAGAGATCTAATAAATGCTGTGATAGATATCTTAGCATTTCCTTTTGTTGCTCTTCAAAATGCACCTGGCTTGCCTTCAGCCACTGCTTCTGTCAGCAGTGGCTTTCTTCTTAATATGGGCTCCCCTGGTCAGAGAGTATGCATGGAAGATAAGGGTATAGTTAAGGCAATTGAAGAAGACATGGGAAAATATATTAAGATACTTGTAGAGGTTGGTGTGCCTGGTATTATCCTTCGGTGTGTAGATCATATGGATTTGAATGATTTGGGCAGGCCTGTCGCATTTCTGGCCAAGATGGTCTGTCACCGACCTTTGGCAATCCAACTCGTGAGTAAAGGTCTTTTGGATCCAAATAGGATGAGAAAGTTGTTTGACTGTTCGGGCCCAAAAGAGGTCACACTGGATGCTCTTATGATTATTTCTGATCTGGCACGCATGGACAAGGTATTCTATGAGTACATTAAAGGTGCTACTATTTTGGAGTTCTTGAAAGATTTTCTTTCGCACGAGGATCCCAATGTGCGAGCCAAAGCCTGTAGTGCTCTTGGGAACATGTGTCGTCATAGCGCCTATTTTTATAGTTCACTTGCTAGACATCAAATTGTTGGTATCCTTATCGAAAGATGTTCTGATCCAGACAAACGAACACGAAAGTTTGCTTGTTTTGCTATTGGAAATGCGGCTTACCACAATGACTTGTTGTATGAGGAGCTGAGGAGATCGATTCCTCATTTAGCAAATTTGTTACAAATGGCTGAGGAAGATAAGACTAAGGCAAATGCAGCAGGAGCACTTAGCAATCTGGTTCGCAACTCTGACAAACTTTGTGAAGACATCGTATCCAAAGGAGCGGTTCAGTCTCTGCTGAAATTAATTTCCGATTGTGCGGTATCAGCCCTAAATCCAGGTAGAAATGATTCAGGAAACGAATCTCCGCTTAAGATCGCTCTGTTTTCCCTGGCAAAGATGTGTGCACATCCACTCTGTAGACAATTCATCCGTTCATCACCTTTGTTCCCTGTGATTGGAAGGCTTCAGCAGTCTCCAGAATCATCCATAGCCAAATATGCCTCCGTCATCATTGGTAAAGTTGCTGATCCTTGA	4020	0.4124	MGVENYHVIELVGEGSFGKVYKGRRKHTGQTVAMKFIMKHGKTEKDIHNLRQEIEILRKLKHENIIQMLDSFESPQEFCVVTEFAQGELFEILEDDKCLPEGQVQAIAKQLVKALHYLHSNRIIHRDMKPQNILIGAGSVVKLCDFGFARAMSTNTVVLRSIKGTPLYMAPELVREQPYNHTVDLWSLGVILYELFVGQPPFYTNSVYALIRHIVKDPVKYPDRMSPNFKSFLKGLLNKAPESRLTWPALLEHPFVKETSDEHEARELREINGSRMRSEAERMVEGKTIQTPTGKNNHMAGMEGHIASPLQSEAQLNGHNIDRTNSSVLDDSPGISNQNIVESGCQRLDRLENNSRTVKNAKLIGQDNEALGHILLPLQKWSKGSQNICSDQDVPQSNQSLRILSNLVAAGAFNSSGRIDELIRELLVFIGAVIAIKSSEVTDMIAKGFSITKILLDNGGSCSSRSYLSHWVEFVEIYSQVVASNNDASGRVLYESSACITVMLSGVAQVLMSSQISGQETSNETANRILDHAKTMGLVDHLCLCLATSGSSLISGSSNMLRAASEACRAIWSLINALDILFMKKCAILFPINALRSHSLHRMEVLQHEQNLFDKADSTKIVDAMTRAFLRSKAVQVAVYYCFHQRLESAMNCCLQLLSRCCLHNEIVPAVLCGLPSSLPVTTVVSGGGDGTIVSEVFTVLSLCSSSVNKDAQSIEPSNVKFKLTNPSALVRHSCLVLAIIAQCLKSTGRNSAMFMLTTAPKKQLARLSVLSHHITHDDKIKASIEPQSASAMLALASILSLESGALVESPISEIAIPLIPRTSTLSDHLKFSCGNENELDPCNFSGKLSYWQGVRDGYVGLLDSRIKWGGPLAVQQLCASGIPLQIMGLLGSDVLDASHGTDHQNDRVGLSPIGVVWTISLLCHCLSGGAMVYRQILIRNEHIKLISNLICDVHIKLVKCWIGPGGGKAGVRDLINAVIDILAFPFVALQNAPGLPSATASVSSGFLLNMGSPGQRVCMEDKGIVKAIEEDMGKYIKILVEVGVPGIILRCVDHMDLNDLGRPVAFLAKMVCHRPLAIQLVSKGLLDPNRMRKLFDCSGPKEVTLDALMIISDLARMDKVFYEYIKGATILEFLKDFLSHEDPNVRAKACSALGNMCRHSAYFYSSLARHQIVGILIERCSDPDKRTRKFACFAIGNAAYHNDLLYEELRRSIPHLANLLQMAEEDKTKANAAGALSNLVRNSDKLCEDIVSKGAVQSLLKLISDCAVSALNPGRNDSGNESPLKIALFSLAKMCAHPLCRQFIRSSPLFPVIGRLQQSPESSIAKYASVIIGKVADP*	1340

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra8g0461	1339	SMART	arm_5	1243	1297	IPR000225	GO:0005515
	Vra8g0461	1339	SMART	arm_5	526	576	IPR000225	GO:0005515
	Vra8g0461	1339	SMART	arm_5	1203	1242	IPR000225	GO:0005515
	Vra8g0461	1339	SMART	arm_5	1119	1159	IPR000225	GO:0005515
	Vra8g0461	1339	PANTHER	PROTEIN KINASE RELATED	1	1337	IPR045193	GO:0004674
	Vra8g0461	1339	Coils	Coil	40	60	-	-
	Vra8g0461	1339	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	123	135	IPR008271	GO:0004672\|GO:0006468
	Vra8g0461	1339	SMART	serkin_6	6	256	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra8g0461	1339	ProSitePatterns	Protein kinases ATP-binding region signature.	12	39	IPR017441	GO:0005524
	Vra8g0461	1339	Pfam	Protein kinase domain	6	256	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra8g0461	1339	CDD	STKc_STK36	4	256	-	-
	Vra8g0461	1339	SUPERFAMILY	ARM repeat	1032	1336	IPR016024	-
	Vra8g0461	1339	ProSiteProfiles	Protein kinase domain profile.	6	256	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra8g0461	1339	Pfam	HEAT repeats	1133	1237	-	-
	Vra8g0461	1339	SUPERFAMILY	Protein kinase-like (PK-like)	4	273	IPR011009	-
	Vra8g0461	1339	Gene3D	Transferase(Phosphotransferase) domain 1	2	317	-	-
	Vra8g0461	1339	Coils	Coil	1207	1227	-	-
	Vra8g0461	1339	Gene3D	-	1065	1335	IPR011989	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra8g0461	Vra-Chr8	6239232	6252628	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra8g0461	1	245	AGC Kinase Gene Family	AT3G08720	38.866	3.31e-46	172

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	ULK_Fused	Vra8g0461		Pkinase	3.1e-78	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra8g0461	K06228		-	gmx:100792102	2342.38