Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0458 ATGCAAACCTTTGAACAAAATTTCACCTTTTGCATCCCAAATTCATCACACTCTGATATCTGTATCACTCAAGATCTTCAATTTCAACTTCATACCACTCCTCAAATGCCTCAACTCACATCTTCCTCCAAGCCTCCAAGATCCTCAAATCTAAGCAACCGCAAACCCTCTTTGAAAAACATCACAATCCCTTCTATAACTTCAGCTCTTGTGATGCCACACCACATGGAAACAACCTTGTATGACAGCAGCAATCAAGTTTCTTCTTCTTTGGATGATGTTAACAATAGCAGAGAGGATAAGCACTACAGAGGGGTCAGGAGAAGGCCGTGGGGGAAGTTTGCTGCAGAAATTCGAGACCCTAATAGAAAAGGCTCAAGGGTGTGGCTTGGAACCTTTGACACAGCCATAGAAGCTGCTAAGGCTTATGACAAAGCTGCTTTCAAGATGAGAGGGAGCAAAGCCATATTGAACTTCCCTTTGGAGGTTGGAGAATCTGAAGAAGAATCGGTTTCGATCAAGGTTGGTTTGAAGAGAGAAAGAGAGGAAGAAAGTGAAGGGAAGAAGGAAAGTAACAAGCTTGTGAAGAAAGAAGAGTGCTCTCCCAAAGGGGTGTGCCCTTTGACTCCATCATGTTGGAAAGGCTTTTGGGACACTGATGTTATGGGAACCATCTTTAGTGTTCCTCCTTTGTCACCATTATCTCCACTCATGGTTGTTTGA 723 0.4329 MQTFEQNFTFCIPNSSHSDICITQDLQFQLHTTPQMPQLTSSSKPPRSSNLSNRKPSLKNITIPSITSALVMPHHMETTLYDSSNQVSSSLDDVNNSREDKHYRGVRRRPWGKFAAEIRDPNRKGSRVWLGTFDTAIEAAKAYDKAAFKMRGSKAILNFPLEVGESEEESVSIKVGLKREREEESEGKKESNKLVKKEECSPKGVCPLTPSCWKGFWDTDVMGTIFSVPPLSPLSPLMVV* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0458 240 MobiDBLite consensus disorder prediction 35 58 - -
Vra8g0458 240 Gene3D AP2/ERF domain 101 162 IPR036955 GO:0003700|GO:0006355
Vra8g0458 240 Pfam AP2 domain 102 152 IPR001471 GO:0003700|GO:0006355
Vra8g0458 240 PRINTS Ethylene responsive element binding protein signature 103 114 IPR001471 GO:0003700|GO:0006355
Vra8g0458 240 PRINTS Ethylene responsive element binding protein signature 142 162 IPR001471 GO:0003700|GO:0006355
Vra8g0458 240 ProSiteProfiles AP2/ERF domain profile. 102 160 IPR001471 GO:0003700|GO:0006355
Vra8g0458 240 SMART rav1_2 102 166 IPR001471 GO:0003700|GO:0006355
Vra8g0458 240 CDD AP2 101 160 IPR001471 GO:0003700|GO:0006355
Vra8g0458 240 SUPERFAMILY DNA-binding domain 102 162 IPR016177 GO:0003677
Vra8g0458 240 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 33 229 - -
Vra8g0458 240 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 33 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0458 Vra-Chr8 6182035 6183151 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0458 22 233 AP2-EREBP Transcription Factor Family AT5G51190 49.321 4.19e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vra8g0458 AP2 4e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0458 K09286 - gmx:100795866 275.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0178 3 2056639 2057934 Vra8g0458 8 6182035 6183151 PCT