Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0457 ATGACAACAGCAGAAGAAACTTCAAACTTGGATCTCATACGCCAACATCTCTTAGGTGAAAACATCTCAAGCTCCTTTTTCTCCAATTTCTCCAACCTCAACCCTGTCAAGCTTGAAGCCCCCTCATCACCACACTTTGATTTCTCAGACAACACCAGCTTCTTCACTTTCCTTCAAGGCTATGACTTGGTGGCAGACATGGAGTTTGTTGATCACAAGCCCATCATGAACTCCACATCAACACCAACCATCTCCACCCCCTTAAACAAATGCAATTCTCCTGAACCATTGGCATCATCAGAATCACAAGAGAAGGCAAAGAAAGCAGAATACGATGAAGCAAAACGTTACAGAGGAGTTAGGAGAAGGCCCTGGGGTAAGTTTGCTGCTGAAATCCGTGACCCTACAAGGAAAGGTACAAGGGTTTGGCTTGGCACTTTCGACAGTGAAATTGACGCTGCTAAGGCCTATGATTGTGCTGCTTTCAAGATGAGAGGTCAGAAGGCCATCCTGAACTTCCCTCTTGAGGCTGGAGAGTCTGATCCTAAACCAAACACTTGTGGCAGGAAAAGAAGAAGAGACAACCTTGAATCATGA 597 0.4539 MTTAEETSNLDLIRQHLLGENISSSFFSNFSNLNPVKLEAPSSPHFDFSDNTSFFTFLQGYDLVADMEFVDHKPIMNSTSTPTISTPLNKCNSPEPLASSESQEKAKKAEYDEAKRYRGVRRRPWGKFAAEIRDPTRKGTRVWLGTFDSEIDAAKAYDCAAFKMRGQKAILNFPLEAGESDPKPNTCGRKRRRDNLES* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0457 198 MobiDBLite consensus disorder prediction 78 110 - -
Vra8g0457 198 MobiDBLite consensus disorder prediction 183 198 - -
Vra8g0457 198 Pfam AP2 domain 116 166 IPR001471 GO:0003700|GO:0006355
Vra8g0457 198 MobiDBLite consensus disorder prediction 78 100 - -
Vra8g0457 198 MobiDBLite consensus disorder prediction 175 198 - -
Vra8g0457 198 CDD AP2 115 174 IPR001471 GO:0003700|GO:0006355
Vra8g0457 198 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 5 194 - -
Vra8g0457 198 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 194 - -
Vra8g0457 198 ProSiteProfiles AP2/ERF domain profile. 116 174 IPR001471 GO:0003700|GO:0006355
Vra8g0457 198 PRINTS Ethylene responsive element binding protein signature 117 128 IPR001471 GO:0003700|GO:0006355
Vra8g0457 198 PRINTS Ethylene responsive element binding protein signature 156 176 IPR001471 GO:0003700|GO:0006355
Vra8g0457 198 SMART rav1_2 116 180 IPR001471 GO:0003700|GO:0006355
Vra8g0457 198 SUPERFAMILY DNA-binding domain 116 176 IPR016177 GO:0003677
Vra8g0457 198 Gene3D AP2/ERF domain 115 176 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0457 Vra-Chr8 6150116 6151261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0457 1 196 AP2-EREBP Transcription Factor Family AT5G07580 40.670 3.21e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vra8g0457 AP2 1.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0457 - - ccaj:109813158 291.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0139 3 1594614 1599467 Vra8g0457 8 6150116 6151261 PCT