Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0454 ATGTCCTTACTATATTCCTTACTCTGTGCCTTCAACCTTCAAAGAACACACACAGAGAACTGTCCTCAAACCAACAACCCCTTCTCAGATCTTACTATGATGTCTCACTCATTTGTTATGATTGCAGCATCACTGTTATTTGTTATAGCTCAAAGTGTTGTGGCAGTGAATTCAGTTTCACAAGCTGATAAGATAAGCACTTTGCCAGGGCAGCCACCAGTCAAATTCCAGCAATATGCAGGTTATGTTACTGTGGATGAGAAGCAGAACAGAGCTTTGTTTTACTACTTTGTTGAAGCAGAAGTGGAACCAGCTTCAAAGCCACTAGTTCTATGGTTAAATGGAGGGCCTGGTTGTTCTTCTGTTGGAGCTGGAGCTTTTGTTGAGCATGGCCCTTTCAAACCAAGTGAAAATGGACTTTTGAAAAATGAATTTAGCTGGAACAAAGAGGCAAATGTGCTGTACTTGGAATCACCAGCTGGTGTTGGTTTCTCCTACTCTGCCAACAAATCTTTCTATGACTATGTGAATGATGAAATGACAGCAAGGGACAATCTTGTTTTCCTACAGCGTTGGTTCACTAAATTCCCAAAGTTCAAAAACAATGACTTCTTTATCACAGGGGAAAGCTATGCAGGTCACTATGTACCCCAACTTGCACAACTCATTGTTCAAACCGAGACCAGGTTCAATCTCAAGGGAATAGCAATAGGGAATCCTCTTCTAGAATTTAACACGGATTTCAACTCTAGAGCTGAGTTTTTCTGGTCCCATGGCCTAATATCAGATTCAACTTACGAAATCATCACCAAAGTATGCAACTTTTCCCAAATAAGGAGACAGCACCTAAGTGGGACACTTACCCCCCTTTGTTCAGGAATACATAGGCTAGTGTCAACGGAAGTTAGTAGATATATTGANACATATGATGTTACACTTGATGTGTGTCTTTCATCAGTAGATCAACAGGCTTATGTGCTGAATCAAATGACTCAACTGCAAGAGGGAGGAAAGATAGATGTTTGTGTGGATGATGAAACTACTTCATATTTGAATAGGAAAGACGTGCAAAAAGCTCTTCACGCTAAGCTCGTAGGGATCACTTCTTGGTCAATTTGCAGCGATATTCTTAAATATGACATGCAGAATCTAGAGATTCCAACAATTTCTATTCTAGGTGCACTTGCTAAGTCCGGTATCAGGGTTCTGGTATACAGTGGAGATCAAGATTCAGTGTTCTCATTAATTGGTACAAGAACCCTGGTAAATGGACTGGCCAAGAACTTTGGACTTAACACAACAGTGTCCTACAGAACCTGGTTTGAGGGAAGACAGGTGGCTGGTTGGACACAAGTATATGGAGACATCTTATCATTTGCCACTGTAAGAGGAGCTGCTCATGAAGCTCCATTTTCACAGCCAGAGAGATCACTGGTGCTATTGAAAGCATTTTTAGAAGGAAAACCACTTCCACAACCATTCTTTCAAATATATGAATGA 1500 0.408 MSLLYSLLCAFNLQRTHTENCPQTNNPFSDLTMMSHSFVMIAASLLFVIAQSVVAVNSVSQADKISTLPGQPPVKFQQYAGYVTVDEKQNRALFYYFVEAEVEPASKPLVLWLNGGPGCSSVGAGAFVEHGPFKPSENGLLKNEFSWNKEANVLYLESPAGVGFSYSANKSFYDYVNDEMTARDNLVFLQRWFTKFPKFKNNDFFITGESYAGHYVPQLAQLIVQTETRFNLKGIAIGNPLLEFNTDFNSRAEFFWSHGLISDSTYEIITKVCNFSQIRRQHLSGTLTPLCSGIHRLVSTEVSRYIXTYDVTLDVCLSSVDQQAYVLNQMTQLQEGGKIDVCVDDETTSYLNRKDVQKALHAKLVGITSWSICSDILKYDMQNLEIPTISILGALAKSGIRVLVYSGDQDSVFSLIGTRTLVNGLAKNFGLNTTVSYRTWFEGRQVAGWTQVYGDILSFATVRGAAHEAPFSQPERSLVLLKAFLEGKPLPQPFFQIYE* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0454 499 SUPERFAMILY alpha/beta-Hydrolases 67 491 IPR029058 -
Vra8g0454 499 Pfam Serine carboxypeptidase 69 487 IPR001563 GO:0004185|GO:0006508
Vra8g0454 499 Gene3D - 389 487 - -
Vra8g0454 499 Gene3D alpha/beta hydrolase 59 317 IPR029058 -
Vra8g0454 499 PRINTS Carboxypeptidase C serine protease (S10) family signature 143 155 IPR001563 GO:0004185|GO:0006508
Vra8g0454 499 PRINTS Carboxypeptidase C serine protease (S10) family signature 156 166 IPR001563 GO:0004185|GO:0006508
Vra8g0454 499 PRINTS Carboxypeptidase C serine protease (S10) family signature 192 217 IPR001563 GO:0004185|GO:0006508
Vra8g0454 499 PRINTS Carboxypeptidase C serine protease (S10) family signature 457 470 IPR001563 GO:0004185|GO:0006508
Vra8g0454 499 PANTHER CARBOXYPEPTIDASE 50 494 - -
Vra8g0454 499 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 50 494 IPR001563 GO:0004185|GO:0006508
Vra8g0454 499 Gene3D - 342 377 - -
Vra8g0454 499 ProSitePatterns Serine carboxypeptidases, serine active site. 206 213 IPR018202 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0454 Vra-Chr8 6100793 6123379 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0454 350 490 Calmodulin-binding Proteins AT2G22960 27.660 7.50e-14 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0454 K16297 - gmx:100805028 842.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0454 8 6100793 6123379 Vra8g0454 8 6100793 6123379 ECH