Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0437 ATGCTGCATCAGATAGAGATGGATCACTCTGAGCTCTTTCAGTTCCTTTCAAACACCAATGGTTCTTTCTTTCCTGAATCTGCATCATCTTTCCAACCATTTCATGCACCACCTCTTCAAGATAAAGCCCTTGCTGCTTTGAGGAACCACAAAGAGGCTGAGAAGAGAAGAAGGGAAAGAATCAATGCTCACCTCAATAAGCTTCGTACTCTTCTTCCTTGTAATTCCAAGACCGACAAGGCTTCACTCTTGGCCAAGGTGGTCGAAAGGTTGAAGGAGTTGAAGCAGCAGATGTCGGAAATAACTCTATGCGAAACGTTTCCTTCAGAGACCGACGAGGTCTCCGTTCTGTCCACCAGCGGTGACGAGAGTGGCGGTGACGGACGAGTCATATTCAAGGCGTCGTTGTGCTGTGAGGACCGCTCCGACCTCATCCCTGATCTCGTCAAAATTCTCAAGTCTCTGCACCTCACGACACTAAAAGCCGAAATCGCAACGCTGGGCGGAAGAACCCGCAACGTTCTCGTGGTGGCCACCGACAAAGATCACGGCGTTGAATCGATCCACTTCCTGGACAGTTCGTTGAACTCTCTGCTAGAACACAACAGCACATCCAAACGACGCCGTGTGGTGGGACCAAAGTCCATCGCTTAA 654 0.4969 MLHQIEMDHSELFQFLSNTNGSFFPESASSFQPFHAPPLQDKALAALRNHKEAEKRRRERINAHLNKLRTLLPCNSKTDKASLLAKVVERLKELKQQMSEITLCETFPSETDEVSVLSTSGDESGGDGRVIFKASLCCEDRSDLIPDLVKILKSLHLTTLKAEIATLGGRTRNVLVVATDKDHGVESIHFLDSSLNSLLEHNSTSKRRRVVGPKSIA* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0437 217 Pfam Helix-loop-helix DNA-binding domain 49 94 IPR011598 GO:0046983
Vra8g0437 217 CDD ACT_UUR-ACR-like 135 183 - -
Vra8g0437 217 Gene3D - 40 103 IPR036638 GO:0046983
Vra8g0437 217 PANTHER TRANSCRIPTION FACTOR BHLH106-RELATED 16 213 - -
Vra8g0437 217 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 49 104 IPR036638 GO:0046983
Vra8g0437 217 Coils Coil 44 64 - -
Vra8g0437 217 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 94 IPR011598 GO:0046983
Vra8g0437 217 PANTHER TRANSCRIPTION FACTOR BHLH30 16 213 IPR045847 GO:0003700|GO:0006355
Vra8g0437 217 SMART finulus 51 100 IPR011598 GO:0046983
Vra8g0437 217 CDD bHLH_AtAIG1_like 40 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0437 Vra-Chr8 5749818 5751283 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0437 23 205 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 64.516 3.16e-69 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra8g0437 HLH 4.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0437 - - pvu:PHAVU_007G243000g 340.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0437 8 5749818 5751283 Vra8g0437 8 5749818 5751283 ECH