Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0435 ATGGGAATCTGCCATGGAAAACCCATCGAGACCCAGCAGAGTGAGAGAGAAAACCCAGAATTCCCGAGCGAAGTTCCGTCATCAACAAACCCCAAACCCTCGAAATTCCCATTCTACAGCCCGAGCCCTTTGCAGAGTTGGTTTAAAAACTCGCCGGCGAACTCAAACCCTAGCAGCGTGAGTTCCACACCGTTGAGGATCTTCAAGCGCCCCTTCCCACCTCCATCGCCGGCCAAGCACATTCGCGCTCTCCTCGCTCGGCGCCACGGCTCCGTGAAGCCGAACGAAGCCTCCATACCTGAAGGCAGCGAGTGTGAGATTGGGCTGGATAAGAGCTTCGGCTTCGCCAAACAGTTCTCGGCCCATTACGAGCTCGGCGAAGAAGTGGGCCGCGGCCATTTCGGCTACACCTGCTCCGCCAAGCCCAAGAAGGGCCCCCTCAAAGGCATCGACGTTGCCGTCAAAGTCATTCCAAAATCCAAGATGACTACAGCAATTGCCATAGAGGATGTAAGGAGAGAAGTGAAGATATTGCGGGCTCTAACTGGACATAAGAATCTGGTGCAATTCTATGAAGCCTATGAAGATGATGAAAATGTTTTTATAGTTATGGAGTTATGCAAAGGAGGGGAATTGCTAGATAGGATTCTTTCCAGGGGTGGAAAGTACCCAGAAAACGATGCCAGAGTAGTTATGATCCAAATATTAAGTGTTGTAGCATTTTGTCATCTGCAGGGTGTTGTTCACCGTGATCTCAAGCCAGAGAATTTTCTTTTCACTTCTAAGGATGAAAGTTCCACGTTGAAGGCCATTGATTTTGGATTGTCTGACTATGTGAAGCCAGATGAGAGATTGAATGATATTGTTGGAAGTGCTTATTATGTAGCTCCAGAAGTTTTGCATAGATCTTATGGGACAGAAGCAGATATGTGGAGCATTGGTGTTATTGCTTATATTCTTTTATGTGGGAGCCGTCCCTTTTGGGCTCGGACTGAATCTGGTATATTTCGGGCTGTACTTAAGGCAGATCCAAGTTTTGATGAGGCTCCTTGGCCTTCTTTATCTGCCGATGCTAAAGATTTTGTAAAGAGGTTGTTGAACAAGGATTATCGTAAGAGGTTGACTGCAGCTCAGGCACTAAGTCATCCATGGCTGGTGAATCATCATGATGATATGAGGATACCTTTGGATATGATAATCCACAAGCTTGTTAAAGCTTACATTTGCTCATCTTCTTTACGTAAATCTGCTTTACGGGCTCTTGCAAAGACATTAACAGTAGCTCAGCTAGCTTATCTCAGAGATCAATTTACTCTGTTAGGGCCAAACAAGAGTGGATTAATTTCTATGCAGAACTTTAAGACGGCTGTTTTGAGGAGCTCCACAGATGCTTCAAAGGATTCAAGGGTCTTAGATTACGTGAATATGGTTAGTTCTATCCAATATAGGAAACTAGATTTTGAGGAATTTTGTGCTGCCGCTATAAGTATGCACCAACTAGAGGGAATGGAGAGCTGGGAGCAGCATGCAAGGCGAGCCTATGAGCTTTTTGAAAAGGAAGGAAATAGACCAATTATGATTGAGGAACTTGCTTCGGAACTTGGGCTTAGTCCATCAGTACCTGTTCATGTAGTACTTCAAGATTGGATAAGGCACTCAGATGGGAAGCTTAGTTTCTTGGGGTTTGTCAGGCTTCTGCATGGGGTTTCTTCCCGTGCATTTCAGAAGGCTTGA 1734 0.4562 MGICHGKPIETQQSERENPEFPSEVPSSTNPKPSKFPFYSPSPLQSWFKNSPANSNPSSVSSTPLRIFKRPFPPPSPAKHIRALLARRHGSVKPNEASIPEGSECEIGLDKSFGFAKQFSAHYELGEEVGRGHFGYTCSAKPKKGPLKGIDVAVKVIPKSKMTTAIAIEDVRREVKILRALTGHKNLVQFYEAYEDDENVFIVMELCKGGELLDRILSRGGKYPENDARVVMIQILSVVAFCHLQGVVHRDLKPENFLFTSKDESSTLKAIDFGLSDYVKPDERLNDIVGSAYYVAPEVLHRSYGTEADMWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDEAPWPSLSADAKDFVKRLLNKDYRKRLTAAQALSHPWLVNHHDDMRIPLDMIIHKLVKAYICSSSLRKSALRALAKTLTVAQLAYLRDQFTLLGPNKSGLISMQNFKTAVLRSSTDASKDSRVLDYVNMVSSIQYRKLDFEEFCAAAISMHQLEGMESWEQHARRAYELFEKEGNRPIMIEELASELGLSPSVPVHVVLQDWIRHSDGKLSFLGFVRLLHGVSSRAFQKA* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0435 577 CDD STKc_CAMK 122 384 - -
Vra8g0435 577 Gene3D Transferase(Phosphotransferase) domain 1 213 405 - -
Vra8g0435 577 MobiDBLite consensus disorder prediction 15 38 - -
Vra8g0435 577 SUPERFAMILY EF-hand 414 568 IPR011992 -
Vra8g0435 577 ProSitePatterns Protein kinases ATP-binding region signature. 129 155 IPR017441 GO:0005524
Vra8g0435 577 MobiDBLite consensus disorder prediction 1 38 - -
Vra8g0435 577 PANTHER SERINE/THREONINE-PROTEIN KINASE 24 572 - -
Vra8g0435 577 Gene3D - 406 568 - -
Vra8g0435 577 Gene3D Phosphorylase Kinase; domain 1 116 212 - -
Vra8g0435 577 ProSiteProfiles Protein kinase domain profile. 123 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0435 577 SMART serkin_6 123 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0435 577 Pfam Protein kinase domain 123 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0435 577 PANTHER CDPK-RELATED KINASE 1 24 572 - -
Vra8g0435 577 SUPERFAMILY Protein kinase-like (PK-like) 115 419 IPR011009 -
Vra8g0435 577 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0435 Vra-Chr8 5712874 5719256 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0435 1 575 EF-hand Containing Proteins AT3G50530 66.561 0.0 845
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vra8g0435 Pkinase 2.2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0435 - - gmx:100796678 1065.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0435 8 5712874 5719256 Vra8g0435 8 5712874 5719256 ECH