Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0434 ATGCTTCTGAATGCTTTGCCGGTACTTCGTTGCGTGCACCTCGTGGTGGCGGCGGCGGTGGCTTCGGTCCTGCTCCGCCGCATGCAGTGCCAGGAGATAAGCGACTTCGATAACCCTGTGGTAATGCCACGTGTCACCCGTCTTGTGTATGATCAAATGTCCAACATGACCTCGCTTCTCAATCACGAAATCAAAGCTAGCTCCGGTTTCTGCGTCAAAGATCCGGAAGCTGATTGGAATAAAGCATTTAATTTTTCTTCTGATTTGGACTTTGTGTCTACTTGCATTCGGAAGACTAAAGGAGATATTTTGCAACGGTTGTGTACAGCAGCAGAAATAAAATTTTACTTAAATAGCTTATTGGAGAGGTCTAGCACTAGGAGTGCCAACTATTTGAAGCCTAACAGGAACTGCAATTTAAACTCATGGGTATCAGGTTGTGAGCCAGGATGGGCATGTAGTGTTCCCACAAGCCAGCAAGTTGACCTTATAAATTCACAGGAGATGCCTGCCAGAACTCTAAACTGCGAAGCATGTTGTGATGGGTTCTTCTGTCCCCATGGTATCACATGCATGATACCTTGCCCTCTTGGATCTTATTGCCCTAGTGCTGTACTCAATAAGACAACTGGTGTTTGTGAACCATATCTTTACCAACTGCCTCCAATGCAGCCAAATCATACCTGTGGAGGAGCAAATATTTGGGCAGATATTGGTAGCAGTAGTGAGATATTTTGTTCGGAAGGATCATATTGCTCCACCATTACAAAAAAAATACCTTGTAGTAGTGGGCATTACTGTAGGATGGGTTCCACATCTGAGCAAAGGTGTTTCAAGTTGAGTTCATGTGATTCAAACACCGTGACCCAAAATATTCAAGCCTATGGAATCATGCTCATTGTTGCTTTGAGTACTTTGTTACTCATTATCTACAGCTGTTCTGACCAAGTTCTGACTATTAGAGAAAGGAGAATGGCAAAGTCCAGAGAAGCAGCAGCCAGAAGTGTAAGAAAGACTGCAAATGCTCGCCAAAGATGGAAAGATGCAAAAGATGCTGCTAAAAAGAGTGCAAGTGGACTGCAAGCTCAACTATCACGAACATTTACTCGGAAAAAGGACATAGATCCAGAAGAAATTAGAATTTTGAATCAACCAACTACTGAAACAAAAATAGAATTGTTTTCACATTCACATCCCTCACCTATGATTGGTAGCTCATATGATGGGCCAAAGAGAAAGGGAAAAGAACCTAGTGATTTGGTGCAGACAATGAATCAAGTGGAAAAGGATGCAAATGTTAAGAGCAACATTCTTGCAGAAACAGAAATTCGAGCGAAAAATGTTACAGCAAAAGTGCCTAAGGAAAAACATCCGAATACACATAGCCAAATTTTTAAGTATGCATACGCTCAACTTGAGAAAGAAAAGGCTCAGCAAGAAGAAAACAAGAACCTTACCTTCTCAGGAGTAATTAGTATGGCTACCAAAAGTGAAGAAAGGAAAAGGCCTTTGATTGAAATATCCTTCAAAGATCTGACTCTTACTTTGAAAGCACACAATAAACTTATATTGAGATGTGTCACGGGGAAGATTAAACCTGGACGCATCACTGCTGTCATGGGTCCATCAGGTGCTGGAAAGACAACTTTTCTTTCTGCAATAGCCGGGAAGGCATTTGGATGCAAGGTGACTGGTTCGATTTTTGTAAATGAAAAGAATGAATCAATCCACTCATTTAAGAAAATTATTGGTTTTGTGCCACAAGATGATATAGTTCATGGAAACCTGACTGTGGAAGAAAACTTCCGGTTCAGTGCACTGTGCAGGTTACCTGCTGACTTGCCAAAACCAGAAAAAGTTCTGATTGTTGAAAGAGTTATTGAATTCTTGGGGCTTCAATCTGTGCGGAATTCTTTGGTTGGAACTGTAGAAAAGCGAGGAATCTCTGGAGGCCAAAGGAAACGTGTAAATGTTGGATTGGAAATGGTCATGGAACCTTCACTCATGATCTTGGATGAACCCACTTCTGGGTTGGACAGTGCATCATCTCAACTCCTTCTTAGAGCACTAAGACGGGAAGCTCTTGAAGGAGTGAACATTTGCATGGTGGTTCACCAACCCAGCTACGCTTTGTTTAATATGTTCGATGACTTGATACTCCTGGCAAAAGGTGGCCTTACTGTCTATCATGGATCAGTCAAGAAAGTTGAAGAATACTTCGCAGACCTCGGGATAAATATACCAAAACGAATTAATCCTCCTGATTACTTCATTGACATTTTGGAAGGCATAGCAGTACCTAGTGGAAGTTCAGAAGTCAGTTATAAGGAACTGCCATTGAGATGGATGCTTCATAAGGGATACCCAATACCTCCTGATATGCAGCAGAATGCAGCACAACTTGGTATGTTTGAAACTGCAAACCCAGCTAGAGAAAAAGATCCTGATAGCTCTAGCCATGAAGAAAGAAGCTTTGCAGGAGAATTATGGCAAGATGTGAGAAATGCTATGGAACTAAAGGGGGAGAAAATAAGACTCAATTTTTTTAAATCGAAGGATTTATCTGAACGTAAAACTCCTGGTATATTCAAGCAATACAAGTACTTCCTTATACGGGTTGGTAAACAGAGATTACGAGAATCTAAGATCCAAGCTATAGATTATTTAATATTATTACTCGCTGGAGCCTGCTTAGGATCACTTACCAAAGCTAGCGATCAGACCTTTGGTGCAGCTGGATACACCTATACAGTGATTGCTGTATCTCTCTTATGCAAAATATCTGCCCTGAGATCCTTTTCTCTAGATAAATTACACTACTGGAGGGAGAGTGATTCTGGCATGAGCAGCTTGGCGTATTTCCTCTCCAAAGACACAATCGATCATTTCAATTCAGTGATCAAACCTGTGGTTTACCTGTCAATGTTCTACTTTTTTACCTACCCAAGATCAACTTTTGCAGATAATTACATAGTGCTGCTTTGTCTTGTATATTGTGTGACTGGCATAGCATATGCATTTGCCATACTCTTTGAACCCGGTGCAGCCCAGCTATGGTCGGTACTTCTTCCAGTTGTTTTTACTCTCATTGCGACACAACCAAAAGATAGTAAATTTTTGAAGGATATAGCTTATTTTTGCTACCCTAGATGGGCTTTAGAAGCGTTCATAATTGCAAATGCTGAAAGGTATCACGGGGTGTGGCTCTTAACTCGTTGTGGTTCATTACTGAAAAGTGGGTATAATCTTCATGATTGGGGTTTGTGCATATCTATCCTCATTCTCATGGGTGTAATTTCTCGGACAGTAGCATTTTTCTGTATGCTCACCTTTCTAAAGAAATAA 3345 0.4114 MLLNALPVLRCVHLVVAAAVASVLLRRMQCQEISDFDNPVVMPRVTRLVYDQMSNMTSLLNHEIKASSGFCVKDPEADWNKAFNFSSDLDFVSTCIRKTKGDILQRLCTAAEIKFYLNSLLERSSTRSANYLKPNRNCNLNSWVSGCEPGWACSVPTSQQVDLINSQEMPARTLNCEACCDGFFCPHGITCMIPCPLGSYCPSAVLNKTTGVCEPYLYQLPPMQPNHTCGGANIWADIGSSSEIFCSEGSYCSTITKKIPCSSGHYCRMGSTSEQRCFKLSSCDSNTVTQNIQAYGIMLIVALSTLLLIIYSCSDQVLTIRERRMAKSREAAARSVRKTANARQRWKDAKDAAKKSASGLQAQLSRTFTRKKDIDPEEIRILNQPTTETKIELFSHSHPSPMIGSSYDGPKRKGKEPSDLVQTMNQVEKDANVKSNILAETEIRAKNVTAKVPKEKHPNTHSQIFKYAYAQLEKEKAQQEENKNLTFSGVISMATKSEERKRPLIEISFKDLTLTLKAHNKLILRCVTGKIKPGRITAVMGPSGAGKTTFLSAIAGKAFGCKVTGSIFVNEKNESIHSFKKIIGFVPQDDIVHGNLTVEENFRFSALCRLPADLPKPEKVLIVERVIEFLGLQSVRNSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLMILDEPTSGLDSASSQLLLRALRREALEGVNICMVVHQPSYALFNMFDDLILLAKGGLTVYHGSVKKVEEYFADLGINIPKRINPPDYFIDILEGIAVPSGSSEVSYKELPLRWMLHKGYPIPPDMQQNAAQLGMFETANPAREKDPDSSSHEERSFAGELWQDVRNAMELKGEKIRLNFFKSKDLSERKTPGIFKQYKYFLIRVGKQRLRESKIQAIDYLILLLAGACLGSLTKASDQTFGAAGYTYTVIAVSLLCKISALRSFSLDKLHYWRESDSGMSSLAYFLSKDTIDHFNSVIKPVVYLSMFYFFTYPRSTFADNYIVLLCLVYCVTGIAYAFAILFEPGAAQLWSVLLPVVFTLIATQPKDSKFLKDIAYFCYPRWALEAFIIANAERYHGVWLLTRCGSLLKSGYNLHDWGLCISILILMGVISRTVAFFCMLTFLKK* 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0434 1114 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 507 748 IPR003439 GO:0005524
Vra8g0434 1114 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 35 1111 - -
Vra8g0434 1114 CDD ABCG_EPDR 505 731 - -
Vra8g0434 1114 ProSitePatterns ABC transporters family signature. 648 662 IPR017871 GO:0005524
Vra8g0434 1114 Gene3D - 493 747 IPR027417 -
Vra8g0434 1114 Coils Coil 1109 1114 - -
Vra8g0434 1114 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 507 740 IPR027417 -
Vra8g0434 1114 MobiDBLite consensus disorder prediction 396 417 - -
Vra8g0434 1114 SMART AAA_5 533 725 IPR003593 -
Vra8g0434 1114 PANTHER ABC TRANSPORTER G FAMILY MEMBER 24 35 1111 - -
Vra8g0434 1114 Pfam ABC transporter 526 676 IPR003439 GO:0005524
Vra8g0434 1114 MobiDBLite consensus disorder prediction 331 361 - -
Vra8g0434 1114 Pfam ABC-2 type transporter 705 1114 IPR043926 GO:0140359
Vra8g0434 1114 MobiDBLite consensus disorder prediction 331 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0434 Vra-Chr8 5694035 5703859 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0434 531 737 Calmodulin-binding Proteins AT2G36910 26.549 6.64e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0434 - - gmx:100783798 1884.77