Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0424 ATGTCAAATAGTAGGAACACACATTGGTGTTATAGTTGCAGGAGGCCAGTTCGGCTGGGACGGCGAGATGTGGTTTGTCCTAGCTGCAACGAGGGATTTGTTCATGAACTGAATGATATGGTGCATGTTAATCCTTTTGATTTGTTTGGAATGGACAACAATGAAGAACGAGATCAAAGGGTTGGACTCATGGAAACTTTCTCTGCCTTTATGAGGCATCAAATGGCAGACAGGGGCAGAAGTCGTGACATCAGGGCACAAACAGATTCAAATCCTGAACACAGTGCAGGGTTTGCTCCTCTGCTGATCTTTGGTGGCCAAATACCTTTCAGATTGTCTGGCCATGGTGGCTTTGAAGCTCTCTTTAACGGGGCTCCTGGAATTGGTCTTACACGAGGTAACACAGGTGATTATTTTGTTGGTCCTGGACTTGAAGAACTTTTTGAACAGCTTTCAGCTAATACCAGGCAAGGTCCAGCACCAGCATCAAGATCCTCAATTGATGCTATGCCTACTATCAAGATCACACAGAGGCATCTTCGATCAGATTCACATTGTCCTGTGTGCAAAGATAAATTTGAGCTGGGGTCTGAAGCAAGACAAATGCCATGCAACCATTTATATCACTCAGATTGCATTGTTCCATGGTTGGTCCAGCATAACTCCTGCCCCGTTTGTCGCCAAGAACTGCCACCACAAGGATTGAGTAGTAATCGAGGCACAAATGGTAGAAGTAGAAGTGGAAGGGTAAGTAGTAGTGGTAGGGAGAGCCAGGGAAGGAGAAATCCGTTTTCCTTTTTGTGGCCTTTTCGTTCTTCTCATTCCAGCAGTAATGGTGAAGCAACCGGAAGCAGCACACAAGCACCAACCATCCCAGAGAATAGCCATCATGCAGGGTATTCTGGGTGGCCATTTGAATGA 921 0.4593 MSNSRNTHWCYSCRRPVRLGRRDVVCPSCNEGFVHELNDMVHVNPFDLFGMDNNEERDQRVGLMETFSAFMRHQMADRGRSRDIRAQTDSNPEHSAGFAPLLIFGGQIPFRLSGHGGFEALFNGAPGIGLTRGNTGDYFVGPGLEELFEQLSANTRQGPAPASRSSIDAMPTIKITQRHLRSDSHCPVCKDKFELGSEARQMPCNHLYHSDCIVPWLVQHNSCPVCRQELPPQGLSSNRGTNGRSRSGRVSSSGRESQGRRNPFSFLWPFRSSHSSSNGEATGSSTQAPTIPENSHHAGYSGWPFE* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0424 306 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
Vra8g0424 306 SMART ring_2 186 226 IPR001841 -
Vra8g0424 306 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 3 288 - -
Vra8g0424 306 SUPERFAMILY RING/U-box 166 233 - -
Vra8g0424 306 MobiDBLite consensus disorder prediction 231 306 - -
Vra8g0424 306 Pfam Ring finger domain 185 227 IPR001841 -
Vra8g0424 306 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Vra8g0424 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 233 IPR013083 -
Vra8g0424 306 MobiDBLite consensus disorder prediction 231 260 - -
Vra8g0424 306 MobiDBLite consensus disorder prediction 268 294 - -
Vra8g0424 306 CDD RING-H2_RNF126_like 186 227 - -
Vra8g0424 306 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 3 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0424 Vra-Chr8 5552654 5554945 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0424 121 231 C3H Transcription Factor Family AT5G01980 44.348 9.51e-27 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0424 K11982 - gmx:100787523 574.704