Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0423 ATGGGAATAGAGATTCTGGAGCCTAACACATGCATCAGGGGTTGCTGCACCAGCCCCTCTATTCCCCTTCATCTTCCTCCAGCTTCTTATACTGTCCTCTCTCCTATTGCTCGAGGGGCTGAGAGTGTTGTTTATGAAGGGACTTTGGATGGCATGAGGGTTGCTGTGAAGAAACCCATCTTGTCAACTTCAGAAGACATTAATAAGTTTCATAAAGAATTGCAATTGCTGTGCAAGTTAGATCACCCCGGAATAGCGACATTGATTGCGGCCCATGCAAAACCGCCCAATTACATGTTTTTCTTCAAGTTATATGAATCTCAGAATCTTGCACAGAAGCTGCATGTAGAAGAGTGGATACCAACACTTAATGATGCACTAATGATGGCAATGCAATTAGCAAAGGCTTTGCAATATCTGCATAACCTCGGGATTGTGCATAGAGATGTGAAACCGGCAAATATTCTTCTTGACAAAAGTCTTTGTCCACACCTCACAGATTTTGGTTTGGCAGAATACAAGAATGATCTAAAGGGAGTTTCCATTCAGAATTGGAAGTCTTCTGGAAAGCCTACTGGTGGTTTCCACAAAAAGAATATGGTTGGAACAGTCATTTACATGGCACCTGAAATATTAAGAAAGGAGTTACATACAGAAAAATCTGATGTATACAGTTTTGGGATATCAATCAACGAACTCCTCACTGGTGTTGTGCCATATACAGATCTTCGTACAGAAGCTCAAGCTCACACAGTGCTTGAGATGAACTATACCGAACAGCAACTAACAGCAGCTGTTGTTTCTCATGGATTACGACCCGTACTTGCTACTGAGGACTTGGGTATACCATCCAGATTATTATCAATGATAAACAAATGCTGGGATGGAAATCCTAATGACAGACCCACTTTTGATGAAATAGTCAAGGAACTTGATTTGATTTTGGAGCACTGCAAATTAAAGAAGGAAGAAGATATTTATGTCAGACCTGTTAACTTGCATGTTGATCAACCTGTGGACAACACTGAACACCTTCAGGCTTATCAAGAGAGTTTTAGTTGGTCCACACGTGGTGAACTTTTGACTGCCACTAGTGCAAATAATTCTAGTTTGATAACTAGGCGTGAGTTTTATGACAAGGCTTCTGTATACCACCCAATACTGTCTTGGGGATCTTATGCTACCTGTGGAAGAAGGGAGACTATGGAGGATACACATTTCATTCTGCCCCGTATTTGTGATGAGAAGGATGTCTATGCTTTTGGCATCTTTGATGGCCATAGGGGTGCAGCTGCTGCTGAGTTTTCTTCTAGAGCTGTACCAGCCGTTTTGCAGACTTCAGGTTTTATGGGCAGTCCTGAAAATGCACTAGTGGAAGCATTCATTAGGACAGACGCTGCCTTCAGAAAAGAGCTTGATTCTTATCGCAAATCCAACAGATGTATCCAGAAAGATTGGCATCCAGGATGTACAGCCATTGCTGCTCTTATAGTCAGAAACAAGCTATTTGTTGCTAACGTAGGTGATTGCAGGGCAATCATATGTCGTGCTGGTAATCCAATTTCCTTAAGTAAGGATCACGTTGCAAGTTGTCCTCAAGAGAGAGAACGTGTTATTCGTCAAGGGGGCCATGTACATTGGCAAGTTGACACTTGGAGGGTTGGTCTTCCTGCACTTCAGGTTACACGTTCTATTGGTGATGATGATCTGAAGCCTGCTGTAACTGCAGAACCTGAGATAACTGAAAATACCTTGTGCCCAGATGACGAGTTTCTGGTCATGGCTAGTGATGGCCTGTGGGATGTGATAAGCAGTACAGAGGTCATAAATATCATAAAAGATACTGTTAAGGAGCCTGGAATGTGTTCTAAGAGGTTGGCTACTGAAGCAGTGGAACGTGGCAGCAAAGATAACATAACAGTTATAGTTGTTTTCTTACGTCCTGTGTCCACTGCAGAGAGAATTTACTAG 1971 0.4242 MGIEILEPNTCIRGCCTSPSIPLHLPPASYTVLSPIARGAESVVYEGTLDGMRVAVKKPILSTSEDINKFHKELQLLCKLDHPGIATLIAAHAKPPNYMFFFKLYESQNLAQKLHVEEWIPTLNDALMMAMQLAKALQYLHNLGIVHRDVKPANILLDKSLCPHLTDFGLAEYKNDLKGVSIQNWKSSGKPTGGFHKKNMVGTVIYMAPEILRKELHTEKSDVYSFGISINELLTGVVPYTDLRTEAQAHTVLEMNYTEQQLTAAVVSHGLRPVLATEDLGIPSRLLSMINKCWDGNPNDRPTFDEIVKELDLILEHCKLKKEEDIYVRPVNLHVDQPVDNTEHLQAYQESFSWSTRGELLTATSANNSSLITRREFYDKASVYHPILSWGSYATCGRRETMEDTHFILPRICDEKDVYAFGIFDGHRGAAAAEFSSRAVPAVLQTSGFMGSPENALVEAFIRTDAAFRKELDSYRKSNRCIQKDWHPGCTAIAALIVRNKLFVANVGDCRAIICRAGNPISLSKDHVASCPQERERVIRQGGHVHWQVDTWRVGLPALQVTRSIGDDDLKPAVTAEPEITENTLCPDDEFLVMASDGLWDVISSTEVINIIKDTVKEPGMCSKRLATEAVERGSKDNITVIVVFLRPVSTAERIY* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0423 656 SUPERFAMILY Protein kinase-like (PK-like) 23 339 IPR011009 -
Vra8g0423 656 Gene3D Transferase(Phosphotransferase) domain 1 23 344 - -
Vra8g0423 656 Pfam Protein kinase domain 30 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0423 656 Pfam Protein phosphatase 2C 394 639 IPR001932 -
Vra8g0423 656 PANTHER - 1 656 - -
Vra8g0423 656 SUPERFAMILY PP2C-like 382 648 IPR036457 -
Vra8g0423 656 SMART serkin_6 30 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0423 656 PANTHER PROTEIN PHOSPHATASE 2C 1 656 IPR015655 GO:0004722|GO:0006470
Vra8g0423 656 Gene3D - 380 651 IPR036457 -
Vra8g0423 656 ProSiteProfiles Protein kinase domain profile. 30 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0423 656 SMART PP2C_SIG_2 404 646 IPR001932 -
Vra8g0423 656 SMART PP2C_4 379 644 IPR001932 -
Vra8g0423 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Vra8g0423 656 CDD PP2Cc 391 646 IPR001932 -
Vra8g0423 656 ProSiteProfiles PPM-type phosphatase domain profile. 389 646 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0423 Vra-Chr8 5537821 5547577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0423 99 656 PP2C-type Phosphatase Gene Family AT2G40860 63.280 0.0 740
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-3 Vra8g0423 Pkinase 2.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0423 - - vra:106772697 1326.23