Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0419 ATGAGAGAAGAAGAATCAAACTGGTTCGAAGAGTTACCTTCACCGGAGGAACTCATGCCGTTATCCCAAACCCTAATAAGCCCTCATCTTGCCGTAGCTTTTGACATAACCAACTCTTCCCACCACCAATTTCCACTTCAGCCACCTTCCGCCGCCGAGGACGAACCGGCGCGGACACTTAAGCGGCCAAGACTCGTGTGGACCCCACAGCTCCACAAGCGCTTCGTCGATGCCGTCGCCCACTTGGGGATCAAGAACGCCGTTCCCAAGACCATAATGCAGCTCATGAGCGTCGACGGTTTGACCCGGGAAAACGTCGCCAGCCACCTCCAGAAATACCGCCTTTACTTGAAGCGCATGCAGGGTTTGGCCGGAGGTGCCGCCGCCGCCGACTCCGCCACGGACCACCTCTTCGCCAGCTCGCCTGTGCCGCCGCACTTCCTGCACCCCGCTGCCCGCCCGGCCTCTGACCATTACCTGCCCTTTGTGCCGGGGTTGCAGCAGCACCGCAATCACCACCACCACCAGCAGCACATGGCGGTGCCTGCTCATTTTGGCTCGCCGCGGAATGCGCACTTTGAACTCCCCGTTCTGTCGAGGATGGGTGCTTCGGTGCCGGGTTACGTGGAGGATGTAGAGTCGGGTGGGAGGAAGGTTCTTACTTTGTTTCCAGCTGGAGATGATTGA 687 0.591 MREEESNWFEELPSPEELMPLSQTLISPHLAVAFDITNSSHHQFPLQPPSAAEDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLAGGAAAADSATDHLFASSPVPPHFLHPAARPASDHYLPFVPGLQQHRNHHHHQQHMAVPAHFGSPRNAHFELPVLSRMGASVPGYVEDVESGGRKVLTLFPAGDD* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0419 228 PANTHER BNAA03G55120D PROTEIN 1 181 - -
Vra8g0419 228 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 63 115 IPR006447 GO:0003677
Vra8g0419 228 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 181 IPR044841 GO:0003700|GO:0006355
Vra8g0419 228 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 118 IPR017930 -
Vra8g0419 228 SUPERFAMILY Homeodomain-like 59 119 IPR009057 -
Vra8g0419 228 Gene3D - 59 121 - -
Vra8g0419 228 Pfam Myb-like DNA-binding domain 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0419 Vra-Chr8 5478275 5480087 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0419 1 228 G2-like Transcription Factor Family AT5G05090 52.727 8.34e-75 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vra8g0419 Myb_DNA-binding 1.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0419 - - vra:106771029 432.95