Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0415 ATGCAGTCTCGGATTGTTAATTTTGCTTCTGAACGGGGAATCATGGCGCAGAGTAATTGGGAAGCAGATAAGATGCTTGATGTTTATATTTATGATTATTTGGTGAAGAAGAAGTTGCATAACACTGCTAAAGCATTCATGACAGAAGGGAAGGTTTCTCCCGATCCTGTTGCAATTGATGCTCCTGGTGGTTTTCTTTTTGAGTGGTGGTCTGTTTTTTGGGATATTTTTATTGCACGAACAAATGAGAAACATTCAGAGACTGCTGCAGCATATTTGGAGGCACAACAGAATAAAGTGAAAGAGCAACAGCAACTGCAAATTCAGCATATGCAATTAATTCGTCAAGCTCAACTTCAAAGAAGGGATTCTAATCATCCTCCCCTTGGAGGCCCTGTAAATGCTATCACTACAGAAGGAGTGCTTGGGCAATCTACTGCAAGTGCTTTGGCTGCAAAAATGTATGAGGAGCGGATGAAGCACTCTAACCCCATGGATACAGAGACATCCCAACCACTTTTAGACGCTAGAATGGCCCTCTTGAAATCAACAAATCATCCTGGTCAGATGGTTCAAGGAAATTCAGGAAGTGTGACGGCAGCTTTGCAGCAAATCCAGGCTCGAACACAGCAAACCCCTCAGGATATCAAAGGTGAAGTCAACATGGGTGCCATGCAGAGATCCATGCCTATGGACCCTTCATCAATTTATGGGCAGGGAGGAATGCAGTCAAAGCCTGGCATTGCAAACACAGGATTAAATGCTGGAGTAGGTAGTCTCACATTGAAAGGATGGCCTTTAACTGGCATTGATCAAATTCGTCCTGGTTTTGGAGCACCAGTTCAGAAGCCTCTCCTTCAGAGTGCAAATCAGTTTCAGCTTTTACCTCAACCACAACAGCAGCAGCTCCTTGCACAGGTACAGGCACAAGGAAACATTGGCAATTCACCTGTTTATGGAGATATGGATCCTCAAAGATTAAGGGGATTAAATAGGGGAAGTTTGAACGTGAAAGACGGTCAATCAATTGCAAATGATGGATCTATAGGCTCTCCAATGCAATCTACTTCTTCTAAGATCAACTTGCCACAGATCCAACAATCCACCTCCCAGCAACAACAGGATCCTTTGCATCCACAACAATTGATTCAGAATAACCGGAAAAGGAAGGGACCTACATCTTCAGGACCTGCAAACAGTACTGGAACAGGAAATACACTTGGCCCTTCTAATTCTCAACCATCAACTCCATCGACTCATACTCCTGGTGATGGAGTTGCAATGACGGGTAACTTGCAGAATGTTGCTGGCGTATCCAAAGGCTTGATGATGTATGGTACTGATGGACCGGGTGGTCTTGCATCTTCCACAAATCAACTGTTGCAGGATGACATGGAACATTTTGGGGATGTTGGCTCCTTAGAGGATAATGTGGAATCATTTCTCTCACAGGATGATGGTGATGGAAGGGACTTGTTTGGCACATTGAAACGGAACCCTTCTGAGCATGCTACAGATGCTTCGAAAGGCTTTTCCTTCAGTGAAGTTAGTTCTATCCGCAAAAGCAACAGCAAAGTTGTTTGCTGTCATTTCTCTTCAGATGGGAAAATATTGGCTAGTGCTGGACATGACAAAAAGGTTGTTCTGTGGAACATGGAGACACTGCAAACAGAGAGTACACCAGAGGAACACAATCTTATTATTACTGATGTTCGCTTCAGACCGAATTCAACTCAGCTGGCAACATCTTCATTTGATACAACTGTTCGGTTGTGGGATGCTGCTGATCCAACCTTTTCTTTACAGGCATATAGTGGCCATACTTCACACGTGGTGTCCCTTGATTTTCACCCAAAGAAAAATGATCTTTTCTGTTCCTGTGATGATAACAATGAGATCCGTTTCTGGAATATTAACCAATATTCTTGCAGCCGAGTTTTTAAGGGAGGATCTACCCAGGTGAGGTTTCAGCCAAGGGTTGGTCAACTTCTGGCTGCAGCAAGTGGGAGTCTAGTGTCTCTCTTTGATGTTGAGACTGATAGGCAGATGCACATGTTTCAGGGACACTCTGCAGACGTACATTGTGTCTGTTGGGATACAAATGGAGATTACTTGGCATCTGTGAGTCAAGAATCTGTCAAAGTGTGGTCACTTGCATCTGGGGAGTGCATTCATGAACTTAATTCCAGTGGAAACATGTATCATTCTTGTGTCTTTCACCCAAGCTACTCAACTCTCTTGGTTATTGGAGGATACCAGTCATTGGAGCTATGGAACATGGTTGAGAATAGATGTATGACAATTCCAGCTCATGAGTGTGTGATATCTGCATTAGCACAATCACCCGTCACAGGGATGGTTGCTTCTGCAAGCCATGACAAATCTGTAAAGATTTGGAAATAA 2403 0.4361 MQSRIVNFASERGIMAQSNWEADKMLDVYIYDYLVKKKLHNTAKAFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSETAAAYLEAQQNKVKEQQQLQIQHMQLIRQAQLQRRDSNHPPLGGPVNAITTEGVLGQSTASALAAKMYEERMKHSNPMDTETSQPLLDARMALLKSTNHPGQMVQGNSGSVTAALQQIQARTQQTPQDIKGEVNMGAMQRSMPMDPSSIYGQGGMQSKPGIANTGLNAGVGSLTLKGWPLTGIDQIRPGFGAPVQKPLLQSANQFQLLPQPQQQQLLAQVQAQGNIGNSPVYGDMDPQRLRGLNRGSLNVKDGQSIANDGSIGSPMQSTSSKINLPQIQQSTSQQQQDPLHPQQLIQNNRKRKGPTSSGPANSTGTGNTLGPSNSQPSTPSTHTPGDGVAMTGNLQNVAGVSKGLMMYGTDGPGGLASSTNQLLQDDMEHFGDVGSLEDNVESFLSQDDGDGRDLFGTLKRNPSEHATDASKGFSFSEVSSIRKSNSKVVCCHFSSDGKILASAGHDKKVVLWNMETLQTESTPEEHNLIITDVRFRPNSTQLATSSFDTTVRLWDAADPTFSLQAYSGHTSHVVSLDFHPKKNDLFCSCDDNNEIRFWNINQYSCSRVFKGGSTQVRFQPRVGQLLAAASGSLVSLFDVETDRQMHMFQGHSADVHCVCWDTNGDYLASVSQESVKVWSLASGECIHELNSSGNMYHSCVFHPSYSTLLVIGGYQSLELWNMVENRCMTIPAHECVISALAQSPVTGMVASASHDKSVKIWK* 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0415 800 Pfam LisH 24 50 IPR006594 GO:0005515
Vra8g0415 800 ProSiteProfiles Trp-Asp (WD) repeats profile. 686 726 IPR001680 GO:0005515
Vra8g0415 800 Gene3D - 495 651 IPR015943 GO:0005515
Vra8g0415 800 Gene3D - 652 800 IPR015943 GO:0005515
Vra8g0415 800 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 15 800 IPR044716 GO:0003714
Vra8g0415 800 ProSitePatterns Trp-Asp (WD) repeats signature. 538 552 IPR019775 -
Vra8g0415 800 ProSiteProfiles Trp-Asp (WD) repeats profile. 768 800 IPR001680 GO:0005515
Vra8g0415 800 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 561 593 - -
Vra8g0415 800 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 768 800 - -
Vra8g0415 800 SMART Lish 22 54 IPR006594 GO:0005515
Vra8g0415 800 MobiDBLite consensus disorder prediction 315 430 - -
Vra8g0415 800 ProSiteProfiles LIS1 homology (LisH) motif profile. 22 54 IPR006594 GO:0005515
Vra8g0415 800 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 519 554 - -
Vra8g0415 800 ProSiteProfiles Trp-Asp (WD) repeats profile. 561 593 IPR001680 GO:0005515
Vra8g0415 800 CDD WD40 515 800 - -
Vra8g0415 800 Pfam WD domain, G-beta repeat 601 637 IPR001680 GO:0005515
Vra8g0415 800 Pfam WD domain, G-beta repeat 524 551 IPR001680 GO:0005515
Vra8g0415 800 Pfam WD domain, G-beta repeat 682 717 IPR001680 GO:0005515
Vra8g0415 800 Pfam WD domain, G-beta repeat 768 800 IPR001680 GO:0005515
Vra8g0415 800 Pfam WD domain, G-beta repeat 560 593 IPR001680 GO:0005515
Vra8g0415 800 SMART WD40_4 679 717 IPR001680 GO:0005515
Vra8g0415 800 SMART WD40_4 761 800 IPR001680 GO:0005515
Vra8g0415 800 SMART WD40_4 640 676 IPR001680 GO:0005515
Vra8g0415 800 SMART WD40_4 720 759 IPR001680 GO:0005515
Vra8g0415 800 SMART WD40_4 597 637 IPR001680 GO:0005515
Vra8g0415 800 SMART WD40_4 512 551 IPR001680 GO:0005515
Vra8g0415 800 SMART WD40_4 554 593 IPR001680 GO:0005515
Vra8g0415 800 ProSiteProfiles Trp-Asp (WD) repeats profile. 519 560 IPR001680 GO:0005515
Vra8g0415 800 MobiDBLite consensus disorder prediction 335 430 - -
Vra8g0415 800 PRINTS G protein beta WD-40 repeat signature 538 552 IPR020472 -
Vra8g0415 800 PRINTS G protein beta WD-40 repeat signature 580 594 IPR020472 -
Vra8g0415 800 PRINTS G protein beta WD-40 repeat signature 787 800 IPR020472 -
Vra8g0415 800 SUPERFAMILY WD40 repeat-like 513 800 IPR036322 GO:0005515
Vra8g0415 800 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 604 639 - -
Vra8g0415 800 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG_HOMOLOG 15 800 - -
Vra8g0415 800 ProSiteProfiles Trp-Asp (WD) repeats profile. 604 646 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0415 Vra-Chr8 5391018 5415402 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0415 599 799 Miscellaneous Gene Families AT5G08390 22.330 1.66e-12 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vra8g0415 WD40 0.013 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0415 - - var:108326218 1538.09