Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0406 ATGTATAGTGATGCTGAGGCCGAATCTGAATCTGAACGCAACAGAATGAGTTGTGGCGCCGATGAAGAAGAACAAGGTTCCTTCAAGAGCTTGGCCAAGCAAACGGAGCAGAGTTACCAGTTGCAGCTCGCACTTGCCCTTCGTCTCTCTTCTCATGCTTCTTCTTCGTCCGATCACTCTTCGTCTCTGACTCAGACATTATCACACCGTTTTTGGGTGGATGGTTGTTTGCAATACACTGACAAAATTTTAGATGGCTTTTACTTAATCCATGGGATGGATGCATATACATGGACTCTAAGTACTGATTTGCAGAATGTTGGTATTATTCCATCATTTGAATCACTCATGTCAGTTGAACCCAGTGACGACTCGTCAATTGTTGTGGTTGCTGTTGATAAATCTAGAGATCCTGGTTTGAGAGAACTGCAAAACAGGGTAGCAAGTCTTTCAAATAACTGGATTACCACTAAAGATGCAACTGATCAGCTTGCAAGTCTTATTTGCAATAGGATGGGGGGAGGGTCTTTAACTGAGGAAAATTTAGCTATACGCTGGAAGGAATGCACCCAACTTCTTAAAAGCTGCCTGCACTCTGTCATTCTTCCAATTGGAAGCTTACCCATTGGCCTTTGTGTCCATCGAGCGTTGCTGTTTAAAGTGTTGGCTGACTTAATCAATCTACCATGCCGTATTGCAAAGGGCTGCAAGTATTGCAGAAATGACGTGGGAGCGTCATGCATAGTTCAATTTGGTTCTGACAGGACTAAAGGATGGGGCAGACGATTGGTTTCAAATATAAGAGTCTCCATCCCCCTCTCAACCCATCTCCCCCACCCTTGCAAGTTTATCATTGTCGTACTTGTCTTGTACTGTTGGCACCTGACCAACAACATCACAAAGCCTCCTCTGGTGTCAATAGGGATGGCAATGAGGGAGTATATGATTGATTTAATTGGAAGGCCTGGGGCAACATGTCAACCTGATTCTTTTCTGAATTCTGCTTCTTCAATGTTGGTTGCTTCACCATTATGTCATCCAAAGTTCAAGCCAGTTGAAACAGCTGAATATACAAAGACACTTGCTCAATTGTATTTCTTGGACAGTCAAGCGCTGCATCTTGTATTTGATAGTACATCAGGACCTGCTGTTAATCACAGTGACAAAATGGATCTGCAGCGAACCGAAGCTTTGGGTGCAAATTATGCTGGTGGAAACAGCCATCTGATTGCTTTGATTCCTGGTGCAGAGGAGTATGAATATTTCAATGAAGTAGACCAGACAGTCTTGGATTATCCAAGTCATGAAGTTGATCTTGACGAGGAGGATCTGGATATTCCTTGGAGTGAACTTATTTTGAAGGAGAACATTGGGACAGGGTCATTTGGAACTGTCCTTCGTGCAGACTGGCGTGGTTCCGATGTTGCAGTGAAAATTCTTAAAGTGCAAGGTTTTGATCCTGGGCGATTTGAAGAATTTCTAAAGGAGGTCTCACTCATGAAGCGCCTACGACATCCAAATATTGTACTCTTGATGGGTGCAGTTATTCAACCCCCTAAGTTATCAATTGTAACAGAGTATTTATCTAGAGGCAGTTTGTATGAACTTCTGCACATGCCCAATGTTGGATCATCACTTAGTGAGAGGTGTCGCTTAAAAATGGCTTATGATGTGGCAAGCGGAATGAATTATCTTCATCAAATGAGACCCCCCATTGTGCATAGAGATTTGAAGTCTCCAAATCTTTTGGTTGATGATTCATACACTGTTAAGGTATGTGACTTTGGTCTTTCACGCACAAAGGCAAACACATTTCTTTCTTCTAAAACCGCAGCTGGGACTCCTGAATGGATGGCACCCGAAGTCATCAGAGGAGAACTGTCAAACGAAAAGTGTGATGTATTCAGCTTTGGTGTAATTTTGTGGGAACTAGTCACCCTGCAACAACCATGGAGACATTTAAATCCTTCACAGGTTGTTGCGGCTGTTGGTTTTATGGACAAAAGGCTAGATATTCCAAGGCATGTGAATCCTGAAGTTGCAGCCTTGATTGAGCTCTCCTGGGCCACGGAACCCTGGAGACGGCCTTCTTTCTCCTATATTATGAAATGTTTGCAGCAAATAATTACTGATGCTAGAGGGTGA 2145 0.4317 MYSDAEAESESERNRMSCGADEEEQGSFKSLAKQTEQSYQLQLALALRLSSHASSSSDHSSSLTQTLSHRFWVDGCLQYTDKILDGFYLIHGMDAYTWTLSTDLQNVGIIPSFESLMSVEPSDDSSIVVVAVDKSRDPGLRELQNRVASLSNNWITTKDATDQLASLICNRMGGGSLTEENLAIRWKECTQLLKSCLHSVILPIGSLPIGLCVHRALLFKVLADLINLPCRIAKGCKYCRNDVGASCIVQFGSDRTKGWGRRLVSNIRVSIPLSTHLPHPCKFIIVVLVLYCWHLTNNITKPPLVSIGMAMREYMIDLIGRPGATCQPDSFLNSASSMLVASPLCHPKFKPVETAEYTKTLAQLYFLDSQALHLVFDSTSGPAVNHSDKMDLQRTEALGANYAGGNSHLIALIPGAEEYEYFNEVDQTVLDYPSHEVDLDEEDLDIPWSELILKENIGTGSFGTVLRADWRGSDVAVKILKVQGFDPGRFEEFLKEVSLMKRLRHPNIVLLMGAVIQPPKLSIVTEYLSRGSLYELLHMPNVGSSLSERCRLKMAYDVASGMNYLHQMRPPIVHRDLKSPNLLVDDSYTVKVCDFGLSRTKANTFLSSKTAAGTPEWMAPEVIRGELSNEKCDVFSFGVILWELVTLQQPWRHLNPSQVVAAVGFMDKRLDIPRHVNPEVAALIELSWATEPWRRPSFSYIMKCLQQIITDARG* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0406 714 ProSitePatterns Protein kinases ATP-binding region signature. 457 478 IPR017441 GO:0005524
Vra8g0406 714 PIRSF TyrPK_CSF1-R 16 66 - -
Vra8g0406 714 PIRSF TyrPK_CSF1-R 440 543 - -
Vra8g0406 714 PIRSF TyrPK_CSF1-R 539 714 - -
Vra8g0406 714 ProSitePatterns Serine/Threonine protein kinases active-site signature. 572 584 IPR008271 GO:0004672|GO:0006468
Vra8g0406 714 Pfam Ethylene-responsive protein kinase Le-CTR1 65 255 - -
Vra8g0406 714 SMART serkin_6 451 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0406 714 ProSiteProfiles Protein kinase domain profile. 451 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0406 714 MobiDBLite consensus disorder prediction 1 31 - -
Vra8g0406 714 CDD STKc_MAP3K-like 457 703 - -
Vra8g0406 714 Gene3D Phosphorylase Kinase; domain 1 444 529 - -
Vra8g0406 714 Pfam Protein tyrosine and serine/threonine kinase 452 705 IPR001245 GO:0004672|GO:0006468
Vra8g0406 714 Gene3D Transferase(Phosphotransferase) domain 1 530 713 - -
Vra8g0406 714 PRINTS Tyrosine kinase catalytic domain signature 525 538 IPR001245 GO:0004672|GO:0006468
Vra8g0406 714 PRINTS Tyrosine kinase catalytic domain signature 566 584 IPR001245 GO:0004672|GO:0006468
Vra8g0406 714 PRINTS Tyrosine kinase catalytic domain signature 613 623 IPR001245 GO:0004672|GO:0006468
Vra8g0406 714 PRINTS Tyrosine kinase catalytic domain signature 632 654 IPR001245 GO:0004672|GO:0006468
Vra8g0406 714 PRINTS Tyrosine kinase catalytic domain signature 676 698 IPR001245 GO:0004672|GO:0006468
Vra8g0406 714 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 294 396 - -
Vra8g0406 714 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 424 712 - -
Vra8g0406 714 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 22 255 - -
Vra8g0406 714 SUPERFAMILY Protein kinase-like (PK-like) 435 705 IPR011009 -
Vra8g0406 714 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 294 396 - -
Vra8g0406 714 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 424 712 - -
Vra8g0406 714 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 22 255 - -
Vra8g0406 714 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0406 Vra-Chr8 5258963 5280329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0406 32 712 MAP Kinase Kinase Kinase AT5G03730 52.891 0.0 659
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vra8g0406 PK_Tyr_Ser-Thr 6.2e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0406 K14510 - gmx:100807496 1085.09