Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0372 ATGAAGTTCCAACCTTTTTGGTTGATTCTTCTAATGTTGTTTTGTGCATTTCCCCATTCTCATGCTTTCAATTCTTCTGGAATTGCTTCAGAAGCAAATGCTCTGCTGAAGTGGAAAGCCAGCTTTGACAAGCAGAGTCAAGCTTCTCTCTCTTCATGGACTGCCAACACTTCTTGCAATTGGCTCGGAATTGCATGTGATCACTCCAATCATGTTTCCCAAATAAATCTTCAAAATATTGGATTGAGAGGTACGCTTCAAAATCTCAACTTCTCAATGCTTACAAACATTCACACTCTAAATGTAAGTAACAATTCTTTGAACGGAAGCATTCCTCCTCAAATTGGTGTTCTGTCCAATCTAGTTGTTCTTGATTTGTCTGCTAATAAACTCTCTGGGATTATCCCTTCTGAAATAACACAGTTGATTGGCCTTCAGACATTAATCATGGCACAAAATACTTTTAATGGGTCCCTTCCTCAAGAAATAGGAAGATTGAGGGAGCTGAGAATGCTTCATGTTCCTTATTGCAATCTCACAGGGACAATCCCAATCTCTATAGAAAAGTTGAACAATTTGATTCATCTAGATATAGGATCCAACAACCTTTCTGGCAGCATTCCTCAGAGAATTTGGCACATGGACCTAAAGTATTTGTCATTTGGAACTAATAAATTCCATGGTTCCATTCCCAAAGAAATTGTGAATATGAGGAACCTGGAGTTTCTATATCTTGGGGATAGTGGCCTTTCTGGCACCATGCCCCAAGAAATTTACATGCTGAGGAAACTAGTATATCTCGACATAGGCCATTGTAATCTTTCTGGACACATTCATCGTGAAATTGGTAAGTTGATCAATCTAACTAGTCTTAACCTTTATGGAAACCAATTTTTAGGCTCTATTCCTCCTGAAATTGGACTTTTGAGAAAACTCGGTGAACTTGATTTGTCTCAGAATTTTCTCTCTGGTAAAATCCCTTCCACAATTGGAAACTTGAGCAATCTAAACTTTCTTTACCTTTATGACAACCAATTATCTGGCTTTATCCCATATGAAATAGGAAATTTGCATTCCCTTCTAACAATCCAGTTGCTGGGCAATAATCTCTCTGGACCAATTCCTACTTCCATAGGTAACCTGGTCAATTTGGAATCTATTTTACTTCATCAAAACAATCTTTCTGGACCAATTCCCACTTCCATAGGTAACTTGGTCAATTTGGAATCTGTTTTACTTTATCAAAACAAACTTTCTGGATCCATTCCTTCCACTATTGGAAATTTGTCAAAGCTTCACGAATTCATTTTATTTGACAATAATCTCAGTGGCAAGATTCCAATAGAAATGAACAGGATTATTGCTTTGGAAAGTTTGCAGCTGGTTGATAATAATTTTGTTGGCCATTTACCTCACAACATTTGTGTTGGTGGAAAGTTGGCAAAATTTTCCGCTAGCAATAACCATTTCACTGGCCATATTCCAGAGAGTTTGAAGAATTGCTCTAGCCTTCTACGAGTGAGACTTCAGGAAAATCAACTAACTAGAAACATAACAGATGCTTTTGGTGTACTTCCAAACTTGGTTTACATCGAATTGAGTGAAAACAATTTTTATGGTCATCTTTCACCAAATTGGGGGAAGTTTCGTAGCCTCACAAGCCTCAAGATCTTAAACAATAACTTATCAGGTGTTATCCCACCAGAACTAAGCGAGGCAACCGAATTATGTGAACTTCAGTTATCCTCAAATCATCTTACAGGAAGCATTCCACAAGATTTATCTAAATTGGTTTTGTTGTTTAGTCTATCACTCAACAACAATAATCTTTCAGGAAATATTCCCTCAAAAATTGCATCAATGAAGAATCTTCAAATTTTGAGGCTTGGATCTAATAATTTGTCTGGGTTAATTCCAGGCCAACTTGGAAATTTGCTCAGTTTATTGGAAATGAATTTGAGTCAGAACAAATTTGAGGGAAATATTCCCTTAGAGCTTGGCAAATTAATATCTCTTACAACTCTTGATCTCAGCGAAAATTTGTTGAGGGGAACATTAACACATGTGCTTGGAGGGTTAAAAAAATTAGAAACATTGAATCTCTCTCACAATAGTCTCTCAGGTGATCTTTCTATCTTTGATGAAATGATGAGCTTGACATCTATTGATATATCTTACAATGATTTTGAGGGTCCACTTCCAAACATTCCAGTCTTTCGCAATGCTACAATTGACGCAGTAAGAAATAATAAAGGCTTGTGTGGCAATGTTAGTGGCTTAAAGCCTTGCCTAACACTAAGTGGGAAATCACATAAGCATATGACAAAGAAAGTCATAACAATGGTTCTACCCCTTACTTTGGGCACTCTAATGCTGGCATTGTTTGTTATTGGAGTCTTGTATTATTTATGTAAAACTTCAATGAAAATGGAAGAGGAAGCTACCAATTTACAAACTTCAAACACATTTGCTATATGGAGTTTTGATGGCAAAATGGTATTTGAGAATATTGTTGAAGCCACTGAAAATTTTGACGATAAGCATCTCATTGGAGTTGGAGGGCAAGGACAAGTTTACAAAGCAATGTTACCCTCAGGTCAAGTTGTGGCTGTAAAGAAACTGCATTCAGTTCCAAATGAAGAAAAGCTCAATGTGAAAGCTTTCAGAAGTGAGATCCAAGCTCTGACAGAAATTCGCCATCGTAACATAGTAAAGTTATATGGGTTTTGTTCGCATTACCAATGGTCATTTATGGTGTGTGAATTCTTGGAGAAGGGCAATGTCCAGAATATTTTGAAGGATGATGAAGAAGCAATTGCATTTGATTGGAATAAGAGAGTGAATGTTATTAAAGATGTAGCAAATGCTTTATTGTACATGCATTATGATTGCTCACCACCAATTATTCATCAACTTGCATACACAATGGAAGTGAATGAGAAATGTGACGTGTATAGTTTTGGAGTGTTGGCATGGGAAATACTTCTTGGAAAGCATCCTGCTGATTTTATATCTTCCTCTTTATCATCTTCATCCACAAGTGTGGCCTTAACACTTGATCACTTGACATTGATGGAGAAGTTGGACCAGCGTCTTCCTCCTCCAACAAAATGTTCAGTTAAAGAAGTGACATCAATTGCAAAGATAGCAGTTGCTTGTTTGACTGAAAGTCCACGATCTCGTCCTAATATGAAGGAGGTTGCCAATGAACTTGTAATGTAA 3222 0.37 MKFQPFWLILLMLFCAFPHSHAFNSSGIASEANALLKWKASFDKQSQASLSSWTANTSCNWLGIACDHSNHVSQINLQNIGLRGTLQNLNFSMLTNIHTLNVSNNSLNGSIPPQIGVLSNLVVLDLSANKLSGIIPSEITQLIGLQTLIMAQNTFNGSLPQEIGRLRELRMLHVPYCNLTGTIPISIEKLNNLIHLDIGSNNLSGSIPQRIWHMDLKYLSFGTNKFHGSIPKEIVNMRNLEFLYLGDSGLSGTMPQEIYMLRKLVYLDIGHCNLSGHIHREIGKLINLTSLNLYGNQFLGSIPPEIGLLRKLGELDLSQNFLSGKIPSTIGNLSNLNFLYLYDNQLSGFIPYEIGNLHSLLTIQLLGNNLSGPIPTSIGNLVNLESILLHQNNLSGPIPTSIGNLVNLESVLLYQNKLSGSIPSTIGNLSKLHEFILFDNNLSGKIPIEMNRIIALESLQLVDNNFVGHLPHNICVGGKLAKFSASNNHFTGHIPESLKNCSSLLRVRLQENQLTRNITDAFGVLPNLVYIELSENNFYGHLSPNWGKFRSLTSLKILNNNLSGVIPPELSEATELCELQLSSNHLTGSIPQDLSKLVLLFSLSLNNNNLSGNIPSKIASMKNLQILRLGSNNLSGLIPGQLGNLLSLLEMNLSQNKFEGNIPLELGKLISLTTLDLSENLLRGTLTHVLGGLKKLETLNLSHNSLSGDLSIFDEMMSLTSIDISYNDFEGPLPNIPVFRNATIDAVRNNKGLCGNVSGLKPCLTLSGKSHKHMTKKVITMVLPLTLGTLMLALFVIGVLYYLCKTSMKMEEEATNLQTSNTFAIWSFDGKMVFENIVEATENFDDKHLIGVGGQGQVYKAMLPSGQVVAVKKLHSVPNEEKLNVKAFRSEIQALTEIRHRNIVKLYGFCSHYQWSFMVCEFLEKGNVQNILKDDEEAIAFDWNKRVNVIKDVANALLYMHYDCSPPIIHQLAYTMEVNEKCDVYSFGVLAWEILLGKHPADFISSSLSSSSTSVALTLDHLTLMEKLDQRLPPPTKCSVKEVTSIAKIAVACLTESPRSRPNMKEVANELVM* 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0372 1073 Gene3D Transferase(Phosphotransferase) domain 1 972 1073 - -
Vra8g0372 1073 Gene3D Transferase(Phosphotransferase) domain 1 923 971 - -
Vra8g0372 1073 Gene3D Ribonuclease Inhibitor 30 142 IPR032675 -
Vra8g0372 1073 SUPERFAMILY L domain-like 30 298 - -
Vra8g0372 1073 SUPERFAMILY L domain-like 253 540 - -
Vra8g0372 1073 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Vra8g0372 1073 Gene3D Ribonuclease Inhibitor 215 451 IPR032675 -
Vra8g0372 1073 ProSiteProfiles Protein kinase domain profile. 844 1073 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0372 1073 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 3 158 - -
Vra8g0372 1073 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 143 214 - -
Vra8g0372 1073 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 336 970 - -
Vra8g0372 1073 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 971 1073 - -
Vra8g0372 1073 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 215 353 - -
Vra8g0372 1073 SMART LRR_sd22_2 118 147 - -
Vra8g0372 1073 SMART LRR_sd22_2 405 431 - -
Vra8g0372 1073 SMART LRR_sd22_2 309 335 - -
Vra8g0372 1073 SUPERFAMILY L domain-like 479 743 - -
Vra8g0372 1073 Pfam Leucine rich repeat 671 729 IPR001611 GO:0005515
Vra8g0372 1073 Pfam Protein tyrosine and serine/threonine kinase 976 1071 IPR001245 GO:0004672|GO:0006468
Vra8g0372 1073 Gene3D Ribonuclease Inhibitor 452 764 IPR032675 -
Vra8g0372 1073 PRINTS Leucine-rich repeat signature 121 134 - -
Vra8g0372 1073 PRINTS Leucine-rich repeat signature 693 706 - -
Vra8g0372 1073 Gene3D Phosphorylase Kinase; domain 1 804 922 - -
Vra8g0372 1073 SUPERFAMILY Protein kinase-like (PK-like) 824 1071 IPR011009 -
Vra8g0372 1073 Pfam Leucine Rich Repeat 312 333 IPR001611 GO:0005515
Vra8g0372 1073 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 143 214 - -
Vra8g0372 1073 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 336 970 - -
Vra8g0372 1073 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 971 1073 - -
Vra8g0372 1073 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 3 158 - -
Vra8g0372 1073 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 215 353 - -
Vra8g0372 1073 Gene3D Ribonuclease Inhibitor 143 214 IPR032675 -
Vra8g0372 1073 Pfam Protein kinase domain 845 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0372 1073 ProSiteProfiles Leucine-rich repeat profile. 287 309 IPR001611 GO:0005515
Vra8g0372 1073 ProSiteProfiles Leucine-rich repeat profile. 695 717 IPR001611 GO:0005515
Vra8g0372 1073 SMART LRR_typ_2 333 357 IPR003591 -
Vra8g0372 1073 SMART LRR_typ_2 285 309 IPR003591 -
Vra8g0372 1073 SMART LRR_typ_2 118 142 IPR003591 -
Vra8g0372 1073 SMART LRR_typ_2 405 429 IPR003591 -
Vra8g0372 1073 SMART LRR_typ_2 669 692 IPR003591 -
Vra8g0372 1073 SMART LRR_typ_2 190 214 IPR003591 -
Vra8g0372 1073 SMART LRR_typ_2 621 644 IPR003591 -
Vra8g0372 1073 SMART LRR_typ_2 693 715 IPR003591 -
Vra8g0372 1073 SMART LRR_typ_2 94 116 IPR003591 -
Vra8g0372 1073 SMART LRR_typ_2 525 549 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0372 Vra-Chr8 4824023 4827927 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0372 349 734 Receptor kinase-like Gene Family AT4G08850 33.592 1.99e-50 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vra8g0372 Pkinase 3.3e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0372 - - vra:106770104 1729.53