Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0371 ATGAAGTTACAACCCTTTTGGTTGTTTCTTCTAATGTTGTTTTCTGCATTTCCCCATTCTTATGCTTTCAATTCTTCCGGAATTGCTTCAAAAGCAAATGCTCTGCTGAAGTGGAAAGCCAGCCTTGACAAGCAGAGTCAAGCTTCTCTTTATTCATGGACTGCCAACACTTCTTGCAATTGGTTCGGAATTGCATGTGATCACTCCAATCATGTCTTCCAAATAAATCTTCCAAATATTGGATTAAGAGGTACGCTTCAAAATCTCAACTTCTCAATGCTTACAAACATTCACACTCTAAATGTAAGTAACAACTCCCTGAGCGGAAGTATTCCTCCTCAAATTGGAATTCTGTCCAATCTAGTTGTTCTTGATTTGTCTGCTAATAAACTCTCTGGGATTATCCCTTCTGAAATAACACAGTTGATTAGCCTTCAAAAGTTGAACATGGCACAAAATACTTTTAGTGGGTCCCTTCCTCAAGAAATAGGAAGATTGAGGGAGCTGAGAATGCTTCATGTTCCTTATTGCAATCTCACAGGGACAATCCCAATCTCTATAGAAAAGTTGAACAATTTGATTCATCTAGATATAGGATCCAACAACCTTTCTGGCAGTATTCCTCAGAGAATTTGGCACATGGACCTAAAGTATTTGTCATTTGGAACTAATAAATTCCATGGTTCTTTTCCCAAAGAAATTGTGAATATGAGCAACCTGGAGTTTCTATATCTTGGGGAAAGTGGCCTTTCTGGCACCATGCCCCAAGAAATTGACATGCTGGGGAAACTAATTCATCTCGACATGAGCAGTTGTAATCTTTCTGGTCACATACCTCGTGAAATTGGTAAGTTGATCAGTCTTACTTATCTTAACCTTATTGGAAACCAATTTTCAGGTTTTATTCCTCATGAAATTGGATTTTTGAGAAAACTCAGTGAACTTGATTTGTCTGAGAATTTTCTCTCTGGTAAAATCCCTTCCACAATTGGAAACTTGAGCAATTTAAGTTATCTTTACCTTTTTGGCAACCAATTCTCTGGCTTTATCCCGGATGAAATAGGAAATTTACATTCCCTTCTAACAATCCAGTTGCTGGACAATAATCTCTCTGGACCAATTCCTACTTCTATAGGTAACCTGATCAATTTGGAATCCATTTTACTTTATCAAAACAACCTTTCTGGATCAATTCCTACTTCCATAGGTAACCTGGTCAATTTGGAATTCGTTTTAGTTTCTCAAAACAAACTTTCTGGATCCATTCCTTCCACTATTGGAAATTTGTCGAAGCTTCGTGAATTATTTTTACTTAACAATAATCTCAGTGGCAAGGTTCCAAAAGAAATGAACAGGATTATTGCTTTGGAAAATTTGCAGCTAGCTAATAATAATTTTGTTGGCCATTTACCTCACAACATTTGCATTGGGGGAAAACTAACACGGTTTTCTACTAGCAATAACCATTTCACTGGCCATATTCCAGAGAGTTTGAAGAATTGCTCTACCCTTATACGAGTGAGACTTGAGGAAAATCAATTAACTGGAAACATAACAGATGCTTTTGGTGTACTTCCAAACTTGGACTACATCGAATTGAGTGAAAACAATTTTTATGGTCATCTTTCACCAAATTGGGGGAAGTTCCGCAGCCTCACAAGCCTCAAGATCTCTAACAATAACTTATCAGGTGTTATCCCACCAGAACTAAGCGAGGCAACCGAATTACGAGAACTTCAGTTATCCTCAAATCATCTTACAGGAAGCATTCCACAAGATTTATCTAAATTGGTTTTGTTGTTTCGTCTATCACTCAACAACAATAATCTTTCAGGAAATATTCCCACAAAAATTGCATCAATGAAGAATCTTCAAATTTTGAGGCTTGGATCTAATAATTTGTCTGGGTTAATTCCAGACCAACTTGGAAATTTGCCCAGTTTATTGGAAATGAATTTGAGTCAGAATAAATTTGAGGGAAATATTCCTCCAGATTTTGACAAATTAATATCTCTTACAATTCTTGATCTCAGTGAAAATTTGTTGAGGGGAAGATTAACACATAAGCTTGGAGGATTAGAAAAATTAGAAACGTTGAATCTCTCTCATAATAGTCTCTCAGGTGATCTTTCTAGCTTTGATGATTTGATGGGCTTGACATCTATTGATATATCTTACAATGAGTTTGAGGGTCCACTTCCAAACATTCTTGTGTTTCGCAATGCTACAATGGAAGCAGTAAGAAATAATAAAGGCTTGTGTGGCAATGTTAGTGGCTTAAAGCCTTGCCCAACACTAAGTGGGAAATCACATAATCATATGACAAAGAAAGTCATAACAATGGTTCTACCCCTTACTTTGGGCACTCTAATGCTGGCATTGTTTGTTTTCGGAGTCTTGTATTATTTATGCAAAAATTCAGTGCAAATGGAAGAGGAAGCTACCAATTTACAAACTCTAAACACGTTTGCAATATGGAGTTTTGATGGCAAAATGGTATTTGCGAATATTGTTGAAGCCACTGAAAATTTTGACGATAAGCATCTCATTGGAGTTGGAGGACAAGGACAAGTTTACAAAACAATGTTACCCTCAGGTCAAGTTGTGGCTGTAAAGAAACTGCATTCAGTTCCAAATGAAGAAAACCTTAATGTGAAAGCTTTCAGAAGTGAGATCCAAGCTCTGACAGAAATTCGCCACCGTAACATTGTAAAGTTATATGGGTTTTGTTCACATTCCCAATGGTCATTTCTGGTGTGTGAATTCTTGGAGAAGGGCAATGTCCAGAATATTTTGAAGGATGATGAAGAAGCAATTGCATTTGATTGGAATAAGAGAGTGAATGTTATTAAAGATGTAGCAAATGCTTTATTGTACATGCATTATGATTGCTCACCACCAATTATTCATCGTGATATATCAAGTAAAAATGTCCTTTTGGATTTGGAATATGTGGCACATGTCTCTGATTTCGGAACAGCCAAGTTTCTTAATCCCAATTCATCCAATTGGACCTCATTTGTAGGAACCTTTGGATATGCCGCTCCAGAACTTGCATACACAATGGAAGTGAATGAGAAATGTGACGTGTATAGTTTTGGAGTGTTGGCATGGGAAATACTTCTGGGAAAGCATCCTGGTGATTTTATATCTTCCTTATTATCATATTCATCCACTACTGATCATATGACATTGATGGATAAGTTGGAGCAGCGTCTCCCTCCTCCAACTAAACGTTTACTTAAAGAGGTGGCATCAGTTGTGAAGATAGCACTTGCTTGCATGACTGAAAGTCCACGATCACGCCCTACTATGAAGGATGTTGTCAATGAGCTTGTAGTGTAA 3345 0.3719 MKLQPFWLFLLMLFSAFPHSYAFNSSGIASKANALLKWKASLDKQSQASLYSWTANTSCNWFGIACDHSNHVFQINLPNIGLRGTLQNLNFSMLTNIHTLNVSNNSLSGSIPPQIGILSNLVVLDLSANKLSGIIPSEITQLISLQKLNMAQNTFSGSLPQEIGRLRELRMLHVPYCNLTGTIPISIEKLNNLIHLDIGSNNLSGSIPQRIWHMDLKYLSFGTNKFHGSFPKEIVNMSNLEFLYLGESGLSGTMPQEIDMLGKLIHLDMSSCNLSGHIPREIGKLISLTYLNLIGNQFSGFIPHEIGFLRKLSELDLSENFLSGKIPSTIGNLSNLSYLYLFGNQFSGFIPDEIGNLHSLLTIQLLDNNLSGPIPTSIGNLINLESILLYQNNLSGSIPTSIGNLVNLEFVLVSQNKLSGSIPSTIGNLSKLRELFLLNNNLSGKVPKEMNRIIALENLQLANNNFVGHLPHNICIGGKLTRFSTSNNHFTGHIPESLKNCSTLIRVRLEENQLTGNITDAFGVLPNLDYIELSENNFYGHLSPNWGKFRSLTSLKISNNNLSGVIPPELSEATELRELQLSSNHLTGSIPQDLSKLVLLFRLSLNNNNLSGNIPTKIASMKNLQILRLGSNNLSGLIPDQLGNLPSLLEMNLSQNKFEGNIPPDFDKLISLTILDLSENLLRGRLTHKLGGLEKLETLNLSHNSLSGDLSSFDDLMGLTSIDISYNEFEGPLPNILVFRNATMEAVRNNKGLCGNVSGLKPCPTLSGKSHNHMTKKVITMVLPLTLGTLMLALFVFGVLYYLCKNSVQMEEEATNLQTLNTFAIWSFDGKMVFANIVEATENFDDKHLIGVGGQGQVYKTMLPSGQVVAVKKLHSVPNEENLNVKAFRSEIQALTEIRHRNIVKLYGFCSHSQWSFLVCEFLEKGNVQNILKDDEEAIAFDWNKRVNVIKDVANALLYMHYDCSPPIIHRDISSKNVLLDLEYVAHVSDFGTAKFLNPNSSNWTSFVGTFGYAAPELAYTMEVNEKCDVYSFGVLAWEILLGKHPGDFISSLLSYSSTTDHMTLMDKLEQRLPPPTKRLLKEVASVVKIALACMTESPRSRPTMKDVVNELVV* 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0371 1114 ProSitePatterns Tyrosine protein kinases specific active-site signature. 968 980 IPR008266 GO:0004672|GO:0006468
Vra8g0371 1114 Pfam Leucine rich repeat N-terminal domain 32 67 IPR013210 -
Vra8g0371 1114 Gene3D Phosphorylase Kinase; domain 1 804 922 - -
Vra8g0371 1114 Pfam Leucine rich repeat 550 610 IPR001611 GO:0005515
Vra8g0371 1114 Pfam Leucine rich repeat 96 153 IPR001611 GO:0005515
Vra8g0371 1114 Pfam Leucine rich repeat 623 682 IPR001611 GO:0005515
Vra8g0371 1114 Pfam Leucine rich repeat 287 346 IPR001611 GO:0005515
Vra8g0371 1114 Gene3D Ribonuclease Inhibitor 183 326 IPR032675 -
Vra8g0371 1114 Gene3D Ribonuclease Inhibitor 455 765 IPR032675 -
Vra8g0371 1114 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 133 265 - -
Vra8g0371 1114 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 3 158 - -
Vra8g0371 1114 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 336 1113 - -
Vra8g0371 1114 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 217 352 - -
Vra8g0371 1114 SUPERFAMILY Protein kinase-like (PK-like) 827 1112 IPR011009 -
Vra8g0371 1114 Gene3D Ribonuclease Inhibitor 30 182 IPR032675 -
Vra8g0371 1114 Pfam Leucine Rich Repeat 263 285 IPR001611 GO:0005515
Vra8g0371 1114 Pfam Leucine Rich Repeat 695 711 IPR001611 GO:0005515
Vra8g0371 1114 Gene3D Ribonuclease Inhibitor 327 382 IPR032675 -
Vra8g0371 1114 Gene3D Ribonuclease Inhibitor 383 454 IPR032675 -
Vra8g0371 1114 SMART LRR_sd22_2 669 695 - -
Vra8g0371 1114 SMART LRR_sd22_2 405 431 - -
Vra8g0371 1114 SMART LRR_sd22_2 118 147 - -
Vra8g0371 1114 SMART LRR_sd22_2 309 335 - -
Vra8g0371 1114 Gene3D Transferase(Phosphotransferase) domain 1 923 1114 - -
Vra8g0371 1114 SUPERFAMILY L domain-like 478 742 - -
Vra8g0371 1114 Pfam Protein kinase domain 845 1111 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0371 1114 ProSiteProfiles Protein kinase domain profile. 844 1114 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0371 1114 SUPERFAMILY L domain-like 57 277 - -
Vra8g0371 1114 SMART LRR_typ_2 118 141 IPR003591 -
Vra8g0371 1114 SMART LRR_typ_2 333 357 IPR003591 -
Vra8g0371 1114 SMART LRR_typ_2 309 332 IPR003591 -
Vra8g0371 1114 SMART LRR_typ_2 94 116 IPR003591 -
Vra8g0371 1114 SMART LRR_typ_2 381 405 IPR003591 -
Vra8g0371 1114 SMART LRR_typ_2 621 644 IPR003591 -
Vra8g0371 1114 SMART LRR_typ_2 549 573 IPR003591 -
Vra8g0371 1114 SMART LRR_typ_2 142 166 IPR003591 -
Vra8g0371 1114 SMART LRR_typ_2 645 668 IPR003591 -
Vra8g0371 1114 SMART LRR_typ_2 190 214 IPR003591 -
Vra8g0371 1114 SMART LRR_typ_2 693 715 IPR003591 -
Vra8g0371 1114 SMART LRR_typ_2 261 285 IPR003591 -
Vra8g0371 1114 SMART LRR_typ_2 574 597 IPR003591 -
Vra8g0371 1114 ProSiteProfiles Leucine-rich repeat profile. 695 717 IPR001611 GO:0005515
Vra8g0371 1114 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 3 158 - -
Vra8g0371 1114 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 217 352 - -
Vra8g0371 1114 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 336 1113 - -
Vra8g0371 1114 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 133 265 - -
Vra8g0371 1114 PRINTS Leucine-rich repeat signature 121 134 - -
Vra8g0371 1114 PRINTS Leucine-rich repeat signature 693 706 - -
Vra8g0371 1114 SUPERFAMILY RNI-like 219 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0371 Vra-Chr8 4784354 4788432 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0371 332 761 Receptor kinase-like Gene Family AT4G08850 33.102 6.17e-55 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vra8g0371 Pkinase 4.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0371 - - vra:106770104 1897.48