Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0369 ATGATGTTCATATTTTCAACGCTTTTGTCGATGAAGTTCCAACCCTTTTGGTTGCTTCTTCTAATGTTCTTTTCTGCATTTCCCCATTCTCATGCTTTCAATTCTTCTGGAATTGCTTCAGAAGCAAATGCTCTGCTGAAGTGGAAAGCCAGCCTTGACATGAAGAGTCAAGCTTCTCTCTCTTCATGGACTGCCAACACTTCTTGCAATTGGTTCGGAATTGCATGTGATCACTCCAATCATGTTTCCCAAATAAATCTTCAAAATATTGGATTGAGAGGTACGCTTGAAAACCTCAACTTCTCAATGCTTACAAACATTCACACTCTAAATGTAAGTAACAACTCCCTGAGCGGAAGTATTCCTCCTCAAATTGGAGTTCTGTCCAATCTAGTTGTTCTTGATTTGTCTGCTAATAAACTCTCTGGGATTATCCCTTCTGAAATAACACAGTTGATTAGCCTTCAAAAGTTGAACATGAGTGGTAATATTTTCAGTGAGTCCCTTCCCCAAGAAATAGGGAGATTGAGGGAGCTGAGAATGCTTCATGTTCCTTGGTGCAATCTCACAGGGGCAATCCCAATCTCTATAGAAAAGTTGAACAATTTGATTCATGTAGATGTAGGAGGCAACAACCTTTCTGGCAGCATTCCTCAGAGAATTTGGCACATGGACCTAAACCATTTGTCATTTGGAACTAATAAATTCCATGGTTCCATTCCCAAAGAAATTGTAAATATGAGGAACCTGGAGATTCTATATCTTGGGGAAAGTGGCCTTTCCGGCACCATGCCCCAAGAAATTGACATGCTGGGGAAACTAATACACCTGGTAATGAGCAGTTGTAATCTTACTGGATCCATACCTATTTCAATTGGAGCTTTGACTAATATATCAATTCTTAGCTTACAAAACAACCAACTTTCTGGTCACATTCCTGGTGAAATTGGTGCTTTGACCAATCTATCACTTCTCATCTTAAATGACAATCAACTTTCTGGTTTTATTCCTCATGAAATTGGATTTTTGAGAAAACTCACTGAACTTGATTTGTCTCAGAATTTTCTCTCTGGTAAAATCCCTTCCACAATTGGAAACTTGAGCAATCTAAGTTTTCTATACCTTTATGGCAACCAATTCTCTGGATTTATCCCGGATGAAATAGGAGATTTGCATTCCCTTCAAACAATCCAGTTGCTGGGCAATAATCTCTCTGGACCAATCCCTACTTCCATAGGTAACCTGGTCAATTTGGAATCCATTTTACTTGATCAAAACAACCTCTCTGGACCAATTCCTACTTCCATAGGTAACCTGGTCAATTTGGAATCCGTTTCTCTTTCTCAAAACAAACTTTTTGGATCCATTCCTTCCACTATTGGAAATTTGTCGAAGCTTCGTGAATTATTTTTACTTAACAATAATCTCAGTGGCAAGATTCCAATAGAAATGAACAGGATTATTGCTTTGGAAAGTTTGCAGCTGGCTGATAATAATTTTGTTGGCCATTTACCTCACAACATTTGTGTTGGTGGAAAGTTGGCAAAATTTTCCGCTAGCAATAACCATTTCACTGGCCACATTCCAGAGAGTTTGAAGAATTGCTCTAGCCTTATACGAGTGAGACTTCAGGAAAATCAACTAACTGGAAACATAACAGATGCTTTTGGTGTACTTCCAAACTTGGTTTACATCGAATTGAGTGAAAACAATTTTTATGGTCATCTTTCACCAAATTGGGGGAAGTTTCGTAGCCTCACAAGCCTCAAGATCTCTAACAATAACTTATCAGGTGTTATCCCACCAGAACTAAGCGAGGCAACCGAATTACGTGAACTTCATTTATCCTCAAATCATCTTACAGGAAGCATTCCACAAGATTTATCTAAATTGGTTTTCTTGTTTCGCCTATCACTCGACAACAATAATCTTTCAGGAAATATTCCCTCAAAAATTGCATCAATGAAGAATCTTCAAATTTTGAGGCTTGGATCTAATAATTTGTCTGGGTTAATTCCAGACCAACTTGGAAATTTGTTCAGTTTATTGGAAATGAATTTGAGTCAGAACAAATTTGAGGGAAATATTCCCTTAGAGCTTGGCAAATTAATATCTCTTACGACTCTTGATCTCAGTGAAAATTTGTTGAGGGGAAGATTAACAAATGTGCTTGGAGGATTACAAAAATTAGAAACATTGAATCTCTCTCACAATAGTCTCTCAGGTGATCTTTCTAGCTTTGATGATATGATGAGCTTGACATCTATTGATATATCTTACAATGANTTTGANGGTCCACTTCCAAACATTCCAGTNTTTCGCAATGCTACAATGGANGCNNTAAGAAATAATAAAGGCTTGTGTGGCNANNTTAGTGGCTTNNAGCCTTGCCNAACANTANGTNGNAANTCNCANAANCANANGACAAAGAAAGTCATAANNNTNGTTNTACCCCTTACTTTGGGCANTCTANTNCTNGCATTNTTTNTTTTTGGAGTNTNNTATTATTTATGCAAAACTTCAGNGAAANTNGAAGANNAANCTACCAATTTNCAAACTNCAAACACATTTGCAATATGGAGTTTTGATGGCAAAATGGTATTNGAGAATATTGTTGAAGCCACTGAAAANTTTGACGATAAGCATCTCATTGGAGTTGGAGGNCAAGGACAAGTTTACAAAGCANTGTTANCCTCAGGTCAAGTTGTGGCTGTAAAGAAACTTCATTCAGTTCCAAATGGAGAAAAGCTCAATGTGAAAGCTTTCACAAGTGAGATCCAAGCTCTGACAGAAATTCGCCATCGTAACATTGTAAAGTTATATGGGTTTTGTTCACATTCCCAATGGTCATTTACGGTTTGTGAATTCTTGGAGAAGGGCAATGTCCAGAATATTTTGAAGGATGATGAAGAAGCAATTGCATTTGATTGGAATAAGAGAGTGAATGTTATTAAAGATGTAGCAAATGCTTTATTGTACATGCATTATGATTGCTCACCACCAATTATTCATCGTGATATATCAAGTAAAAATGTCCTTTTGGATTTGGAATATGTGGCACATGTCTCTGATTTCGGAACAGCCAAGTTTCTTAATCCCAATTCATCCAATTGGACCTCATTTGTAGGAACCTTCGGATATGCCGCTCCAGAACTTGCATACACAATGGAAGTGAATGAGAAATGTGACGTGTATAGTTTTGGAGTGTTGGCATGGGAAATACTTCTGGGAAAGCATCCTAGTGATTTTATATCTTCCTTATTATCATCTTCATCCACTGCTGATCATATGACATTGATGGATAAGTTGGAGCAGCGTCTCCCTCCTCCAACTAAACGTTTACTTAAAGAAGTGGCATCAGTGGCGAAAATAGCACTTGCTTGCATGACTGAAAGTCCACGATCACGCCCTACTATAAAGGAGGTTGTCAATGAGCTTGTAATGAGCTTGTAG 3453 0.3727 MMFIFSTLLSMKFQPFWLLLLMFFSAFPHSHAFNSSGIASEANALLKWKASLDMKSQASLSSWTANTSCNWFGIACDHSNHVSQINLQNIGLRGTLENLNFSMLTNIHTLNVSNNSLSGSIPPQIGVLSNLVVLDLSANKLSGIIPSEITQLISLQKLNMSGNIFSESLPQEIGRLRELRMLHVPWCNLTGAIPISIEKLNNLIHVDVGGNNLSGSIPQRIWHMDLNHLSFGTNKFHGSIPKEIVNMRNLEILYLGESGLSGTMPQEIDMLGKLIHLVMSSCNLTGSIPISIGALTNISILSLQNNQLSGHIPGEIGALTNLSLLILNDNQLSGFIPHEIGFLRKLTELDLSQNFLSGKIPSTIGNLSNLSFLYLYGNQFSGFIPDEIGDLHSLQTIQLLGNNLSGPIPTSIGNLVNLESILLDQNNLSGPIPTSIGNLVNLESVSLSQNKLFGSIPSTIGNLSKLRELFLLNNNLSGKIPIEMNRIIALESLQLADNNFVGHLPHNICVGGKLAKFSASNNHFTGHIPESLKNCSSLIRVRLQENQLTGNITDAFGVLPNLVYIELSENNFYGHLSPNWGKFRSLTSLKISNNNLSGVIPPELSEATELRELHLSSNHLTGSIPQDLSKLVFLFRLSLDNNNLSGNIPSKIASMKNLQILRLGSNNLSGLIPDQLGNLFSLLEMNLSQNKFEGNIPLELGKLISLTTLDLSENLLRGRLTNVLGGLQKLETLNLSHNSLSGDLSSFDDMMSLTSIDISYNXFXGPLPNIPVFRNATMXAXRNNKGLCGXXSGXXPCXTXXXXSXXXXTKKVIXXVXPLTLGXLXLAXFXFGVXYYLCKTSXKXEXXXTNXQTXNTFAIWSFDGKMVXENIVEATEXFDDKHLIGVGGQGQVYKAXLXSGQVVAVKKLHSVPNGEKLNVKAFTSEIQALTEIRHRNIVKLYGFCSHSQWSFTVCEFLEKGNVQNILKDDEEAIAFDWNKRVNVIKDVANALLYMHYDCSPPIIHRDISSKNVLLDLEYVAHVSDFGTAKFLNPNSSNWTSFVGTFGYAAPELAYTMEVNEKCDVYSFGVLAWEILLGKHPSDFISSLLSSSSTADHMTLMDKLEQRLPPPTKRLLKEVASVAKIALACMTESPRSRPTIKEVVNELVMSL* 1151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0369 1150 Gene3D Transferase(Phosphotransferase) domain 1 957 1149 - -
Vra8g0369 1150 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1002 1014 IPR008266 GO:0004672|GO:0006468
Vra8g0369 1150 ProSiteProfiles Leucine-rich repeat profile. 729 751 IPR001611 GO:0005515
Vra8g0369 1150 ProSiteProfiles Leucine-rich repeat profile. 609 632 IPR001611 GO:0005515
Vra8g0369 1150 Pfam Leucine rich repeat N-terminal domain 39 77 IPR013210 -
Vra8g0369 1150 Pfam Leucine rich repeat 344 404 IPR001611 GO:0005515
Vra8g0369 1150 Pfam Leucine rich repeat 106 163 IPR001611 GO:0005515
Vra8g0369 1150 Pfam Leucine rich repeat 705 762 IPR001611 GO:0005515
Vra8g0369 1150 Gene3D Phosphorylase Kinase; domain 1 840 956 - -
Vra8g0369 1150 Gene3D Ribonuclease Inhibitor 487 797 IPR032675 -
Vra8g0369 1150 SUPERFAMILY Protein kinase-like (PK-like) 863 1146 IPR011009 -
Vra8g0369 1150 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 180 313 - -
Vra8g0369 1150 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 274 385 - -
Vra8g0369 1150 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 9 180 - -
Vra8g0369 1150 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 370 1149 - -
Vra8g0369 1150 SUPERFAMILY L domain-like 567 790 - -
Vra8g0369 1150 SUPERFAMILY L domain-like 316 622 - -
Vra8g0369 1150 ProSiteProfiles Protein kinase domain profile. 878 1148 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0369 1150 SUPERFAMILY L domain-like 40 310 - -
Vra8g0369 1150 Pfam Leucine Rich Repeat 610 631 IPR001611 GO:0005515
Vra8g0369 1150 SMART LRR_typ_2 655 678 IPR003591 -
Vra8g0369 1150 SMART LRR_typ_2 128 151 IPR003591 -
Vra8g0369 1150 SMART LRR_typ_2 583 607 IPR003591 -
Vra8g0369 1150 SMART LRR_typ_2 295 319 IPR003591 -
Vra8g0369 1150 SMART LRR_typ_2 487 511 IPR003591 -
Vra8g0369 1150 SMART LRR_typ_2 104 126 IPR003591 -
Vra8g0369 1150 SMART LRR_typ_2 727 749 IPR003591 -
Vra8g0369 1150 SMART LRR_typ_2 608 631 IPR003591 -
Vra8g0369 1150 SMART LRR_typ_2 703 726 IPR003591 -
Vra8g0369 1150 SMART LRR_typ_2 367 391 IPR003591 -
Vra8g0369 1150 SMART LRR_typ_2 200 224 IPR003591 -
Vra8g0369 1150 SMART LRR_typ_2 152 176 IPR003591 -
Vra8g0369 1150 SMART LRR_typ_2 439 463 IPR003591 -
Vra8g0369 1150 SMART LRR_typ_2 343 366 IPR003591 -
Vra8g0369 1150 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 9 180 - -
Vra8g0369 1150 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 274 385 - -
Vra8g0369 1150 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 370 1149 - -
Vra8g0369 1150 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 180 313 - -
Vra8g0369 1150 Gene3D Ribonuclease Inhibitor 384 486 IPR032675 -
Vra8g0369 1150 Gene3D Ribonuclease Inhibitor 271 383 IPR032675 -
Vra8g0369 1150 Pfam Protein kinase domain 879 1145 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0369 1150 PRINTS Leucine-rich repeat signature 131 144 - -
Vra8g0369 1150 PRINTS Leucine-rich repeat signature 727 740 - -
Vra8g0369 1150 SMART LRR_sd22_2 727 746 - -
Vra8g0369 1150 SMART LRR_sd22_2 295 324 - -
Vra8g0369 1150 SMART LRR_sd22_2 439 465 - -
Vra8g0369 1150 SMART LRR_sd22_2 343 369 - -
Vra8g0369 1150 SMART LRR_sd22_2 128 157 - -
Vra8g0369 1150 Gene3D Ribonuclease Inhibitor 40 152 IPR032675 -
Vra8g0369 1150 Gene3D Ribonuclease Inhibitor 225 270 IPR032675 -
Vra8g0369 1150 Gene3D Ribonuclease Inhibitor 153 224 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0369 Vra-Chr8 4759535 4763257 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0369 5 695 Receptor kinase-like Gene Family AT4G08850 34.290 4.34e-103 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vra8g0369 Pkinase 1.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0369 - - vra:106770104 2149.01