Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0366 ATGGCAACAGAAGAAGAGGGTGGTGTTGGAGGAGATGGTGTGAGGCCAAGGAGTGAAGGAAAGAGGAGTTGTTCATCATCAGCAAGGTTTGATGAGGCAGTGAATGGAGAGAATGATGTGTTCCATAGAGGTGTAAGGGAAATAGAAGAAGAGGAGGAGCTGAAGTGGGAGGCTTTGAAAAGGCTTCCAACATATGATAGAATGAGGAGAGTCATTTTGAAGCAAGTTTTGGATAATGGAGGAGTGAACTATGAAGAGGTTGACATCACCAAGCTTGGAGTGCAGGAAAAGAAGCATATCCTTGAGAACATAGTAGGAACTGCAGAAGAGAACAATGAGAGTTTCCTCCGTAGGATGAGGGATAGAATTGATAGGGTAAGCATTGAGATTCCCCAGATTGAAGTAAGGTATGAGCACTTATCAGTTGAAGGGGATGCATATGTTGGAAGCAGGGCACTACCAACACTCTTCAATTCTACCATCAATGCAATACAGGTATTGGTGAATTATCTTGTAAGCCTTCTGTTTGGAGTTTTGGGATTTCTTCAGATTTTGCCTAAAAACACAAAGGCTGTGAAGATTCTTCAAGAAAAAGTTGTCGAGATTCTCAAAGATATTAGTGGAATTGTGAAACCATCAAGAATGACTCTGCTTTTGGGACCTCCAGGATCAGGAAAAACTACATTTCTGAAGGCACTTTCTGGAAAAATGGACAAGGATTTAAGGGTGTCAGGAAGAGTCACTTACTGTGGTCATGAATTGTCAGAGTTTGTTCCCGAAAGAACATGTGCATATATCAGTCAGCATGATCTTCACTATGGAGAGATGACAGTGAGAGAGACACTGGACTTTTCTGGACGGTGCCTGGGAGTAGGAACAAGGTATGATATGCTGGAAGAGTTGTCGAGACGGGAAATAGCAGCCGGCATTAAACCAGATCCTGAGATAGATGCTTTCATGAAAGCCACCGCAATGGAAGGTCAAGAAACAAGTCTTGTTACTGATTACATTCTAAAGATTCTTGGATTGGAAATATGTGCTGATATTTTGGTGGGAGATGAGATGAAAAGGGGCATTTCTGGTGGACAAAAGAAGCGTTTAACAACTGGTGAGATGTTGGCAGGCCCTGCAAAAGCATTCTTCATGGATGAAATTTCAACTGGTTTGGATAGTTCAACAACCTTCCAAATTGTGAGGTTTATGAGGCAGATGGTCCATATAATGGATGTTACCATGATAATCGCTCTTCTGCAGCCTGCACCAGAAACATATGAACTTTTTGATGACATAATATTGCTTTCAGAAGGTGAGATTGTCTACCAAGGTCCCCGTGAGAGTGTTCTGCATTTTTTCGAAAGTGTGGGCTTCAAATGCCCAGAAAGGAAAGGAGTTGCAGACTTCTTACAAGAGGTAACTTCCAAAAAGGACCAAGAACAGTACTGGTTCAGAAGGGACATTCCTTACCAATATGTCACAGTGCCTGAGTTTGTAGCCCATTTCAAGAATTACAGTATCGGTCAGCAACTACATGAAAAGATTAAAGTTCCATACGATTCTAATGAAAGCCATCGCGCTGCATTGGTGAAGGAAAAGTATGGCATCTCCAAATGGGAACTCTTCAAGGCATGCTTTTCAAGAGAGTGGCTTTTGATGAAGCGCAACTATTTCTTATACATATTCAAGACTTTTCAGATTACTATGATGGCTCTGATTGCCATGTCAGTGTTTTTTAGAACAGAAATGAAGCATGGTCAACTTGAAGGTGCAGGAAAATACTATGGTGCACTATTTTTCAGCCTCATCAATATAATGTTCAATGGAGTGGCTGAACTTTCAATGACAGTCATCAAACTTCCCATTTTCTACAAGCAGAGAGATTTATTCTTTTTTCCAGCATGGGCTTTTGCATTGCCCATTTGGGTTCTCAGAGTTCCTCTCTCTCTATTGGAATCAGGATTATGGGTCATCCTCACTTATTATACTATTGGCTTTGCTCCTGCAGCTAGTAGGTTTTTTCGTCAGTTATTGGCATTCTTCTGTGTGAATCAAATGGCTCTGGCCCTATTCCGCTTTATTGCTGCAGTTGGAAGGACAAAAGTTGTGGCACACACACTTGGTTCCTTCACAATTTTACTTGTTTTTGTCCTAAGCGGATTTACTGTTTCAAGAAAGGATATTGGACCATGGATGATATGGTGCTATTATAGTTCACCTATGATGTATGGTCAGAATGCAATAGCCATCAACGAGTTCCTAGACAAAAGATGGAGTGCTAAAAATATTGACCCAAGGATCCCTGAGCCCACAGTTGGGAAGGCTTTTCTTAATGCTAGAGGCATTTTTACAGAAGACTATTGGTACTGGATATCTGTGGCTGCCCTTATAGGATTTTCTTTGCTTTTCAACATTTTTTTCATTCTGGCTCTAACGTATTTGAATCCCTTTGGAAATTCAAAAGCTATTATAATGGAAGATGAAGACCCAAAGAAAAGCACATTTGCTTCATCCTTAGTAGAAAATATGGCAGCTGGAACCACAGAGCACAGTTCAGCTTCAGTTGGCAATTCGTTTGAAGGTATTGATATGGAAGTAAGAAAAAGTGCTCATAGCTCAATTCCTAAAGCTCCAGTGAATACAAAATCAAAGAAGGGAATGGTGCTGCCCTTCAGGCCTCTGTCACTTGCATTTCAAGATGTGAATTATTTCATCGATATGCCACTTGAAATGAAGAAACAAGGAATTGAAGAGAATAAACTCCAACTACTAAGAGACATAAGTGGTGCTTTCAGGCCTGGGATTTTAACAGCATTAGTTGGTGTAAGTGGTGCTGGGAAAACCACCTTGATGGATGTTCTTGCAGGAAGGAAAACAGGTGGTTATATTGAGGGGAGCATCAGCATATCTGGTTATCCCAAAAACCAGGCAACGTTTGCTCGGATCAGTGGTTACTGTGAACAAAATGATATACATTCCCCAAATGTTACAGTCTACGAATCTCTTGTGTTTTCTGCTTGGCTGCGTCTCAGTAACGAGGTTAATAAAGAAACAAGAAAGATGTTCATTGAAGAAATTCTAGAGCTGGTTGAGCTCCACTCAGTGAGGCATTTCATAGTAGGCCTTCCTGGAATAAATGGCTTATCAACGGAGCAGAGAAAGAGGCTCACCATTGCTGTAGAATTGGTTGCAAATCCTTCCATTATTTTTATGGATGAACCAACAACCGGTTTAGATGCTAGAGCTGCAGCAGTTGTTATGCGTACTGTCAGAAATACAGTGGATACAGGTCGAACTGTTGTCTGCACAATTCATCAACCAAGCATTGATATATTTGAAAATTTCGATGAGCTGCTTTTGATGAAGATAGGTGGACAAGTGATGTATGGTGGTCCCCTTGGTCGGAATTCTCAGAATCTTATTGATTACTTTGAGGGTATCACAGGAGTTCCTAAGATTAAAGATGGATATAATCCAGCTACATGGATGCTGGAGATCACTGCTTCTGCTTTTGAGTCTCAACATAATGTGGACTTTGCAGAATTATATGCTAAGTCAGACCTTTATCAAAAGAACCAGGAACTTATTAAGGAAATATGCACACCAGTACCTGGAACAAAGGACCTTTACTTTCCCACTAAATACTCTCAGTCATTTGTTTCTCAATGTAAAGCTTGCTTCTGGAAGCAGAATTGCTCCTATTGGAGGAATCCAGAGTATAATGCCATCAGATTCTTCGTCACAATAGTTATTGGTATCATTTTTGGACTTATTTATTGGGACAAAGGAAAAAAGACTCAAAAGGAGCAGGACCTGTTGAATCTCCTTGGAGCTATGTATGCATCAGTATTTTTCCTTGGAGCCTCCAACACTAACAGTGTTCAACCTGTTGTTGCAATAGAAAGAACAGTTCTATACCGTGAAAGAGCCGCAGGAATGTACTCAGAATTGCCTTATGCAATTGGTCAGGTAGCAATCGAAGTAATTTATGTTGGAACTCAGAGTCTAGCCTATTCCATTATTCTCTACTTGATGATTGGGTTTGAACCACGTTTTGAAAATTTTTTGTGGTTCTATTACTTCATATTCATGTGCTTTATGTACTTCACACTGTATGGAATGATGACTGTAGCTCTGACACCAAACTATCAAATTGCTGCAATTGTTATGTCCTTCTTCATCAATTTCTGGAACCTGTTCTCTGGTTTTCTTATCCCAAGAACGCAAATTCCAATATGGTGGAGATGGTATTATTGGGGGTCTCCTGTGGCATGGACAATATATGGATTGGTGACATCCCAAGTTGGTGACAAAAATAGTCCCATAGAGGTTCCTGGCTTTAGAGTGATGACAGTAAAAGATTACCTTGACAGGAATTTGGGCTTTCAGCATGACTTCCTTGGAGTTGTTGCATTAACTCATGTTGCTTTTTGCCTCCTTTTCGTTTTAGTATTTGCTTATGGCATCAAGTTCCTTAATTTCCAGAAAAGATAG 4488 0.4044 MATEEEGGVGGDGVRPRSEGKRSCSSSARFDEAVNGENDVFHRGVREIEEEEELKWEALKRLPTYDRMRRVILKQVLDNGGVNYEEVDITKLGVQEKKHILENIVGTAEENNESFLRRMRDRIDRVSIEIPQIEVRYEHLSVEGDAYVGSRALPTLFNSTINAIQVLVNYLVSLLFGVLGFLQILPKNTKAVKILQEKVVEILKDISGIVKPSRMTLLLGPPGSGKTTFLKALSGKMDKDLRVSGRVTYCGHELSEFVPERTCAYISQHDLHYGEMTVRETLDFSGRCLGVGTRYDMLEELSRREIAAGIKPDPEIDAFMKATAMEGQETSLVTDYILKILGLEICADILVGDEMKRGISGGQKKRLTTGEMLAGPAKAFFMDEISTGLDSSTTFQIVRFMRQMVHIMDVTMIIALLQPAPETYELFDDIILLSEGEIVYQGPRESVLHFFESVGFKCPERKGVADFLQEVTSKKDQEQYWFRRDIPYQYVTVPEFVAHFKNYSIGQQLHEKIKVPYDSNESHRAALVKEKYGISKWELFKACFSREWLLMKRNYFLYIFKTFQITMMALIAMSVFFRTEMKHGQLEGAGKYYGALFFSLINIMFNGVAELSMTVIKLPIFYKQRDLFFFPAWAFALPIWVLRVPLSLLESGLWVILTYYTIGFAPAASRFFRQLLAFFCVNQMALALFRFIAAVGRTKVVAHTLGSFTILLVFVLSGFTVSRKDIGPWMIWCYYSSPMMYGQNAIAINEFLDKRWSAKNIDPRIPEPTVGKAFLNARGIFTEDYWYWISVAALIGFSLLFNIFFILALTYLNPFGNSKAIIMEDEDPKKSTFASSLVENMAAGTTEHSSASVGNSFEGIDMEVRKSAHSSIPKAPVNTKSKKGMVLPFRPLSLAFQDVNYFIDMPLEMKKQGIEENKLQLLRDISGAFRPGILTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKNQATFARISGYCEQNDIHSPNVTVYESLVFSAWLRLSNEVNKETRKMFIEEILELVELHSVRHFIVGLPGINGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFENFDELLLMKIGGQVMYGGPLGRNSQNLIDYFEGITGVPKIKDGYNPATWMLEITASAFESQHNVDFAELYAKSDLYQKNQELIKEICTPVPGTKDLYFPTKYSQSFVSQCKACFWKQNCSYWRNPEYNAIRFFVTIVIGIIFGLIYWDKGKKTQKEQDLLNLLGAMYASVFFLGASNTNSVQPVVAIERTVLYRERAAGMYSELPYAIGQVAIEVIYVGTQSLAYSIILYLMIGFEPRFENFLWFYYFIFMCFMYFTLYGMMTVALTPNYQIAAIVMSFFINFWNLFSGFLIPRTQIPIWWRWYYWGSPVAWTIYGLVTSQVGDKNSPIEVPGFRVMTVKDYLDRNLGFQHDFLGVVALTHVAFCLLFVLVFAYGIKFLNFQKR* 1496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0366 1495 Pfam ABC transporter 203 385 IPR003439 GO:0005524
Vra8g0366 1495 Pfam ABC transporter 922 1073 IPR003439 GO:0005524
Vra8g0366 1495 PANTHER DRUG RESISTANCE TRANSPORTER-LIKE ABC DOMAIN PROTEIN 13 1495 - -
Vra8g0366 1495 Pfam ABC-transporter N-terminal 108 158 IPR029481 -
Vra8g0366 1495 Gene3D - 907 1139 IPR027417 -
Vra8g0366 1495 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 460 IPR027417 -
Vra8g0366 1495 SMART AAA_5 212 437 IPR003593 -
Vra8g0366 1495 SMART AAA_5 931 1123 IPR003593 -
Vra8g0366 1495 Pfam ABC-2 type transporter 418 491 IPR043926 GO:0140359
Vra8g0366 1495 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 894 1146 IPR003439 GO:0005524
Vra8g0366 1495 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 908 1130 IPR027417 -
Vra8g0366 1495 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 186 460 IPR003439 GO:0005524
Vra8g0366 1495 MobiDBLite consensus disorder prediction 10 26 - -
Vra8g0366 1495 Pfam ABC-2 type transporter 539 751 IPR013525 GO:0016020|GO:0140359
Vra8g0366 1495 Pfam ABC-2 type transporter 1220 1431 IPR013525 GO:0016020|GO:0140359
Vra8g0366 1495 Gene3D - 189 488 IPR027417 -
Vra8g0366 1495 PANTHER ATP-BINDING CASSETTE TRANSPORTER 13 1495 - -
Vra8g0366 1495 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 258 IPR027417 -
Vra8g0366 1495 CDD ABCG_PDR_domain2 891 1129 IPR034003 -
Vra8g0366 1495 Pfam Plant PDR ABC transporter associated 764 822 IPR013581 -
Vra8g0366 1495 MobiDBLite consensus disorder prediction 1 29 - -
Vra8g0366 1495 CDD ABCG_PDR_domain1 201 442 IPR034001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0366 Vra-Chr8 4737680 4748867 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0366 919 1106 Calmodulin-binding Proteins AT2G36910 27.723 6.00e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0366 K08711 - gmx:100788067 2563.1