Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0342 ATGGAAGTGGAGAAGGAAAATGTTACTGCAGAGCCATCTTTACCCGCCTCTGATGGTCAAGATACTATTTCTGATAATGCATCTCTACCCCATTCAATACAACCTATTATTCCACCTGTTATTCCACCTTCTGTTGTGCCTCCTTTAGCTCCAATTCCCACAATTCCTCCCCCTCGCCCACTGGCACCACTTCCAGTTCGGCCACCAGTCATTAGGCCACCTGTGCCACAAAATGGTGAGGTTAGATCAAGTGACTCTGACTCGGACAATGATGACTCAAATGCAAGAATTAACCAGGGGACTGGGGAGTATGAGATATCTGAAGAGAGTAGACTGGTGAGAGAGCGGCAGGAAAAGGCAATGCAGGAACTCATGATGAAGAGGCGGGCAGCTGCTCTTGCCGTTCCTACAAATGATATGGCTGTGCGAGCTCGGCTTCGGCATCTTGGTGAGCCAATAACTCTATTTGGTGAGAGAGAGATGGAGAGGCGGGACAGGTTGCGGATGATTATGGCAAAGCTGGATGCAGAAGGTCAGCTGGAGAAGCTGATGAAAGCTCATGAGGACGAAGAGGCTGCGGCTTCTGCTCCAAAAGACGAGGCTGAGGAAGAACTGCAGTATCCTTTTTACACTGAAGGATCAAAGGCTCTCCTGGATGCCAGAATTTATATTGCTAAATATTCTTTGGCAAGGGCAGCATTACGGATTCAACGTGCACAGAGAAGAAGGGATGATCCAGATGAAGATATGGATGCAGAGATAGATTGGGCATTGAGACAGGCTGGGAATTTGAGTCTCGAATTCAGTGAAATTGGAGATGATCGGCCCCTTTCTGGTTGCTCCTTCTCAAGGGATGGAAAATGGCTTGCCACCTGTTCTCTGACTGGCGCTTCCAAGTTGTGGAACATGCCCAAAATAAAAAAACATTCCACCTTGAAGGGGCACACAGAACGTGCTACAGATGTTGCTTTTTCTCCTGTTCATGATCATTTAGCAACTGCCTCTGCTGATAGAACAGCAAAGTATTGGAACGATCAAGGATCACTTTTGAAGACATTTGAGGGTCATCTGGACCGTCTTGCCCGCATTGCCTTCCATCCTTCAGGGAAGTACCTGGGAACTGCCAGTTTTGACAAGACATGGAGATTATGGGACATAGAAACAGGGGAGGAGTTGCTTCTTCAAGAAGGACATAGTAGAAGTGTGTATGGCCTGGCTTTCCACCGCGATGGATCATTAGCTGCATCTTGTGGACTAGACTCTCTGGCTCGTGTTTGGGACCTGCGAACTGGAAGAAGTATTCTTGCACTGGAAGGTCATGTCAAACCGGTTCTTGGCATTAGTTTTTCACCTAATGGATATCATCTAGCCACTGGTGGTGAAGACAACACGTGTCGGATTTGGGATTTGAGGAAGAAGAAATCCTTTTATACTATTCCTGCTCACTCGAATTTAATATCACAAGTTAAATTTGAACCACAAGAAGGTTACTTTTTGGTAACTGCCTCATATGACATGACTGCTAAGGTTTGGTCGGGCCGTGACTTTAAGCCTGTGAAGACACTATCTGGGCATGAAGCAAAAGTTACCTCTGTGGATGTTCTTGGAGATGGTGGCCACATTGTTACCGTCTCCCATGATCGCACAATAAAACTGTGGTCCAGCAATACGACCAACGAACAAGCAATGGATGTTGATTAA 1701 0.4656 MEVEKENVTAEPSLPASDGQDTISDNASLPHSIQPIIPPVIPPSVVPPLAPIPTIPPPRPLAPLPVRPPVIRPPVPQNGEVRSSDSDSDNDDSNARINQGTGEYEISEESRLVRERQEKAMQELMMKRRAAALAVPTNDMAVRARLRHLGEPITLFGEREMERRDRLRMIMAKLDAEGQLEKLMKAHEDEEAAASAPKDEAEEELQYPFYTEGSKALLDARIYIAKYSLARAALRIQRAQRRRDDPDEDMDAEIDWALRQAGNLSLEFSEIGDDRPLSGCSFSRDGKWLATCSLTGASKLWNMPKIKKHSTLKGHTERATDVAFSPVHDHLATASADRTAKYWNDQGSLLKTFEGHLDRLARIAFHPSGKYLGTASFDKTWRLWDIETGEELLLQEGHSRSVYGLAFHRDGSLAASCGLDSLARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKKKSFYTIPAHSNLISQVKFEPQEGYFLVTASYDMTAKVWSGRDFKPVKTLSGHEAKVTSVDVLGDGGHIVTVSHDRTIKLWSSNTTNEQAMDVD* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0342 566 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 353 390 - -
Vra8g0342 566 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 437 471 - -
Vra8g0342 566 ProSiteProfiles Trp-Asp (WD) repeats profile. 479 521 IPR001680 GO:0005515
Vra8g0342 566 ProSitePatterns Trp-Asp (WD) repeats signature. 414 428 IPR019775 -
Vra8g0342 566 MobiDBLite consensus disorder prediction 1 112 - -
Vra8g0342 566 Pfam pre-mRNA processing factor 4 (PRP4) like 142 168 IPR014906 -
Vra8g0342 566 PANTHER WD40 REPEAT PROTEIN 101 559 - -
Vra8g0342 566 SMART WD40_4 472 512 IPR001680 GO:0005515
Vra8g0342 566 SMART WD40_4 261 302 IPR001680 GO:0005515
Vra8g0342 566 SMART WD40_4 388 427 IPR001680 GO:0005515
Vra8g0342 566 SMART WD40_4 346 385 IPR001680 GO:0005515
Vra8g0342 566 SMART WD40_4 515 554 IPR001680 GO:0005515
Vra8g0342 566 SMART WD40_4 305 344 IPR001680 GO:0005515
Vra8g0342 566 SMART WD40_4 430 469 IPR001680 GO:0005515
Vra8g0342 566 ProSiteProfiles Trp-Asp (WD) repeats profile. 437 478 IPR001680 GO:0005515
Vra8g0342 566 PANTHER BNAC04G01920D PROTEIN 101 559 - -
Vra8g0342 566 MobiDBLite consensus disorder prediction 13 31 - -
Vra8g0342 566 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 312 344 - -
Vra8g0342 566 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 522 554 - -
Vra8g0342 566 Gene3D - 437 564 IPR015943 GO:0005515
Vra8g0342 566 ProSiteProfiles Trp-Asp (WD) repeats profile. 395 436 IPR001680 GO:0005515
Vra8g0342 566 MobiDBLite consensus disorder prediction 35 75 - -
Vra8g0342 566 PRINTS G protein beta WD-40 repeat signature 331 345 IPR020472 -
Vra8g0342 566 PRINTS G protein beta WD-40 repeat signature 372 386 IPR020472 -
Vra8g0342 566 PRINTS G protein beta WD-40 repeat signature 456 470 IPR020472 -
Vra8g0342 566 SUPERFAMILY WD40 repeat-like 266 553 IPR036322 GO:0005515
Vra8g0342 566 Gene3D - 252 436 IPR015943 GO:0005515
Vra8g0342 566 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 479 512 - -
Vra8g0342 566 CDD WD40 276 554 - -
Vra8g0342 566 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 395 432 - -
Vra8g0342 566 ProSitePatterns Trp-Asp (WD) repeats signature. 456 470 IPR019775 -
Vra8g0342 566 SUPERFAMILY PRP4-like 120 175 IPR036285 -
Vra8g0342 566 Gene3D - 112 182 IPR036285 -
Vra8g0342 566 ProSiteProfiles Trp-Asp (WD) repeats profile. 312 344 IPR001680 GO:0005515
Vra8g0342 566 Pfam WD domain, G-beta repeat 347 385 IPR001680 GO:0005515
Vra8g0342 566 Pfam WD domain, G-beta repeat 396 427 IPR001680 GO:0005515
Vra8g0342 566 Pfam WD domain, G-beta repeat 435 469 IPR001680 GO:0005515
Vra8g0342 566 Pfam WD domain, G-beta repeat 310 344 IPR001680 GO:0005515
Vra8g0342 566 Pfam WD domain, G-beta repeat 278 302 IPR001680 GO:0005515
Vra8g0342 566 Pfam WD domain, G-beta repeat 517 554 IPR001680 GO:0005515
Vra8g0342 566 ProSiteProfiles Trp-Asp (WD) repeats profile. 522 563 IPR001680 GO:0005515
Vra8g0342 566 SMART pr04_2 137 190 IPR014906 -
Vra8g0342 566 Coils Coil 173 193 - -
Vra8g0342 566 ProSiteProfiles Trp-Asp (WD) repeats profile. 353 394 IPR001680 GO:0005515
Vra8g0342 566 ProSitePatterns Trp-Asp (WD) repeats signature. 372 386 IPR019775 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0342 357 553 U-box Gene Family AT2G33340 22.172 1.90e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0342 K12662 - gmx:100788948 941.414