Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0324 ATGGATAATCTCATGAATCTCAAGGATTTCGAATTGAATCCCAACGATCGCTCCATCGAAGGCCTCGCCAAATGGAGATCCGCCGTGTGGCTCGTCAAAAACCCTCGCAGGCGATTCCGGTGGGTTGCCGATCTCGCCAAACGCAAATACGCAGAGGAGAAGCGCCGCAAACTACAGGGAAAGATTCGGGCCATTATCTATGCTGAAAGGGCAGCAATGCAATTTATGGAAGCTATTGCTCCAGCTGAATACAAGGTGTCAGAAAAGACGAGAGAAGCTGGTTTTGGCATTGAACCAGATGATATTGCCTCACTGGTTCGAGGCCATGATTACAAGAGCTATAAAAGAATCGGTCAAGTTGAAGCAATTATAGAGAAACTCGGTGCCTCGGTTGATGATGGTGTTGGTAGCGGCAGTATAGATACCAGGCAAGAGATTTATGGAGTCAACCGTTATACTGAGAAACCTTCTAAAAGCTTCCTGATGTTTGTTTGGGAAGCACTGCATGACTTAACACTAATCATTCTCATGGTCTGTGCGGTAGTTTCTATAGCCATTGGGCTTCCCACCGAAGGATGGCCAAAAGGTGTTTATGATGGTCTGGGAATCATACTTAGTATCTTCTTGGTAGTCAATGTTACTGCTATCAGTGACTATCAGCAATCCCTGCAGTTCAGGGATTTAGACAAGGAAAAGAAAAAGATCTTTGTTCAGGTTACAAGGGACAGAAAACGACAGAAGGTCTCAATTTATGATTTGGTTGTGGGAGATATTGTTCATTTGTCAACTGGTGATCAAGTTCCTGCTGATGGCATTTATATATCAGGATATTCTTTGGTAATTGATGAGTCAAGTTTGACAGGTGAGAGCGAACCAGTAAATATAGATGAAAAAAGACCTTTTCTTCTTTCGGGAACCAAAGTTCAAGATGGTCAGGGGAAGATGATAGTTACGACTGTCGGCATGAGGACTGAATGGGGAAAGTTGATGGAAACTCTAAGTGAGGGTGGAGAGGATGAGACTCCACTACAGGTGAAATTAAATGGAGTTGCTACAGTTATTGGTAAAATTGGTTTGACTTTTTCTGTGCTGACATTTCTGGTGTTGACAATAAGGTTTGTGGTGGAAAAAGCAGTTACTGGTGATTTTTCCAGTTGGTCTTCAAATGATGCATTGAAGCTGCTGGACTACTTTGCTATTGCGGTAACCATAATAGTTGTTGCAATTCCTGAAGGATTGCCATTAGCTGTAACACTTAGTCTTGCTTTTGCAATGAAAAAGCTGATGAAGGATAAGGCACTTGTGAGACATCTTTCTGCTTGTGAAACTATGGGTTCGGCAACTTGCATCTGCACAGACAAAACAGGAACATTGACCACTAACCACATGGTGGTTAATAAACTTTGGATATGTGGAAGGAGCACGGAGATTAAAGGCTATGAGAGCGTTGACAAACTGAAGACAGAGATACCTGAAGAAGTTTTAAGCATCCTTTTGCGAGCTATATTTCAAAATACTTCTTCTGAAGTAGTTAAGGACAAAGATGGAAATACAACAACATTGGGCACACCAACAGAATCGGCATTATTGGAATTTGGCTTGCTTTCAGGTGGCGATTTTGATGCACAGCGTGCAACTTATAAGATACTTAAGGTTGAGCCTTTCAATTCAGTCCGGAAGAAGATGTCTGTGCTAGTAGGTCTTCCTGATGGAGGTGTTCAAGCTTTCTGCAAAGGTGCTTCAGAAATAGTATTAAAATTGTGTAACAAAGTTATTGATCCTAGTGGAATAGTTGTTGATCTTTCTGATGAGCAGGCAAAGAACGTCTCTGACATTATAAATGGCTTTGCCTCTGAAGCTTTGAGAACTCTTTGTTTAGCTGTTAAAGATGTAAATGAATCCTCAGGGGAAACCAGCATCCCTGAAGATGGCTATACTCTGATAGCCATTGTGGGAATTAAGGATCCTGTGCGCCCTGGGGTTAGGGAAGCTGTTCAAACTTGCTTAGCTGCTGGAATAACTGTCCGCATGGTTACCGGTGATAACATAAATACAGCGAAAGCTATAGCTAAAGAATGTGGCATACTTACGGAGGGTGGTGTAGCTATAGAAGGACCCCAATTTCGTGACTTGTCACCAGAGCAAATGGAGAGTATTATACCAAGAATTCAGGTTATGGCGCGATCCTTACCTCTTGACAAGCATACCTTAGTAACCCGTTTGAGGAATATGTTTCGTGAGGTTGTAGCTGTTACTGGCGATGGAACCAATGATGCTCCTGCACTGCATGAGTCGGACATTGGGCTTGCTATGGGCATAGCTGGAACTGAGGTTGCCAAAGAAAATGCGGATGTCATTATAATGGATGATAACTTCACTACTATTGTCAATGTGGCCAGATGGGGACGAGCCATATACATAAACATTCAAAAATTTGTACAGTTTCAGTTAACAGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGTATCACAGGATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTGAACTTGATTATGGACACTCTGGGTGCATTGGCTTTGGCCACTGAACCTCCCAATGATGGACTTATGCTAAGACCCCCTGTTGGAAGGACAACAAGTTTTATTACCAAATCCATGTGGAGAAATATTTTTGGTCAAAGTATATATCAACTAATTGTTCTTGCGGTTCTCACTTTTGACGGGAAGAGACTACTGAGAATTAATGGTCCAGATTCAACTATAGTGCTCAACACTTTGATATTCAACTCCTTTGTATTTTGCCAGGTTTTCAATGAGATAAACAGCCGAGATATTGAAAAGATAAACATATTCAAGGGGATTTTTGAGAGCTGGATATTTTTTACGGTTATTTTGTCGACAGTGGTATTTCAAGTAGTGATAGTTGAGTTCCTGGGAACACTTGCCAGCACAGTGCCTCTAAGCTGGGAATTCTGGGTACTCAGCGTTGTAATTGGAGCAATTAGCTTACCCATAGCTGCTATACTTAAGTGCATCCCAGTTGACAAAGGAGATGCCACAAACCACCATGATGGTTATGAGGCATTGCCTTCTGGTCCCGAGCTCGCATAA 3108 0.4215 MDNLMNLKDFELNPNDRSIEGLAKWRSAVWLVKNPRRRFRWVADLAKRKYAEEKRRKLQGKIRAIIYAERAAMQFMEAIAPAEYKVSEKTREAGFGIEPDDIASLVRGHDYKSYKRIGQVEAIIEKLGASVDDGVGSGSIDTRQEIYGVNRYTEKPSKSFLMFVWEALHDLTLIILMVCAVVSIAIGLPTEGWPKGVYDGLGIILSIFLVVNVTAISDYQQSLQFRDLDKEKKKIFVQVTRDRKRQKVSIYDLVVGDIVHLSTGDQVPADGIYISGYSLVIDESSLTGESEPVNIDEKRPFLLSGTKVQDGQGKMIVTTVGMRTEWGKLMETLSEGGEDETPLQVKLNGVATVIGKIGLTFSVLTFLVLTIRFVVEKAVTGDFSSWSSNDALKLLDYFAIAVTIIVVAIPEGLPLAVTLSLAFAMKKLMKDKALVRHLSACETMGSATCICTDKTGTLTTNHMVVNKLWICGRSTEIKGYESVDKLKTEIPEEVLSILLRAIFQNTSSEVVKDKDGNTTTLGTPTESALLEFGLLSGGDFDAQRATYKILKVEPFNSVRKKMSVLVGLPDGGVQAFCKGASEIVLKLCNKVIDPSGIVVDLSDEQAKNVSDIINGFASEALRTLCLAVKDVNESSGETSIPEDGYTLIAIVGIKDPVRPGVREAVQTCLAAGITVRMVTGDNINTAKAIAKECGILTEGGVAIEGPQFRDLSPEQMESIIPRIQVMARSLPLDKHTLVTRLRNMFREVVAVTGDGTNDAPALHESDIGLAMGIAGTEVAKENADVIIMDDNFTTIVNVARWGRAIYINIQKFVQFQLTVNIVALIINFVSACITGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLMLRPPVGRTTSFITKSMWRNIFGQSIYQLIVLAVLTFDGKRLLRINGPDSTIVLNTLIFNSFVFCQVFNEINSRDIEKINIFKGIFESWIFFTVILSTVVFQVVIVEFLGTLASTVPLSWEFWVLSVVIGAISLPIAAILKCIPVDKGDATNHHDGYEALPSGPELA* 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0324 1035 SUPERFAMILY Calcium ATPase, transmembrane domain M 119 1013 IPR023298 -
Vra8g0324 1035 Gene3D - 166 463 - -
Vra8g0324 1035 Pfam Cation transporting ATPase, C-terminus 837 1010 IPR006068 -
Vra8g0324 1035 Pfam Cation transport ATPase (P-type) 507 591 - -
Vra8g0324 1035 SMART Cation_ATPase_N_a_2 116 188 IPR004014 -
Vra8g0324 1035 SUPERFAMILY HAD-like 450 857 IPR036412 -
Vra8g0324 1035 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 457 661 IPR023299 GO:0000166
Vra8g0324 1035 Gene3D - 17 78 - -
Vra8g0324 1035 PRINTS H+-transporting ATPase (proton pump) signature 609 627 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra8g0324 1035 PRINTS H+-transporting ATPase (proton pump) signature 752 768 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra8g0324 1035 PRINTS H+-transporting ATPase (proton pump) signature 784 809 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra8g0324 1035 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 111 1013 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vra8g0324 1035 ProSitePatterns E1-E2 ATPases phosphorylation site. 453 459 IPR018303 -
Vra8g0324 1035 Pfam Ca2+-ATPase N terminal autoinhibitory domain 8 49 IPR024750 GO:0005516
Vra8g0324 1035 PRINTS P-type cation-transporting ATPase superfamily signature 282 296 - -
Vra8g0324 1035 PRINTS P-type cation-transporting ATPase superfamily signature 451 465 - -
Vra8g0324 1035 PRINTS P-type cation-transporting ATPase superfamily signature 649 660 - -
Vra8g0324 1035 PRINTS P-type cation-transporting ATPase superfamily signature 671 681 - -
Vra8g0324 1035 PRINTS P-type cation-transporting ATPase superfamily signature 752 771 - -
Vra8g0324 1035 PRINTS P-type cation-transporting ATPase superfamily signature 776 788 - -
Vra8g0324 1035 Gene3D - 770 1012 - -
Vra8g0324 1035 PANTHER CALCIUM-TRANSPORTING ATPASE 10 1020 - -
Vra8g0324 1035 Gene3D - 464 653 IPR023299 GO:0000166
Vra8g0324 1035 Gene3D - 654 769 IPR023214 -
Vra8g0324 1035 SFLD Haloacid Dehalogenase 433 805 - -
Vra8g0324 1035 CDD P-type_ATPase_Ca_PMCA-like 140 885 - -
Vra8g0324 1035 Pfam Cation transporter/ATPase, N-terminus 119 183 IPR004014 -
Vra8g0324 1035 SFLD p-type atpase 433 805 IPR044492 -
Vra8g0324 1035 SUPERFAMILY Calcium ATPase, transduction domain A 236 332 IPR008250 -
Vra8g0324 1035 Gene3D - 208 309 - -
Vra8g0324 1035 PANTHER CATION TRANSPORTING ATPASE 10 1020 - -
Vra8g0324 1035 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 203 523 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra8g0324 1035 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 717 840 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra8g0324 1035 Pfam E1-E2 ATPase 236 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0324 Vra-Chr8 4199033 4209071 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0324 61 1032 Primary Pumps ATPases AT3G57330 72.325 0.0 1460
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0324 K01537 - gmx:100785768 1813.12