Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0315 ATGGGGAGGGGGAAGATCGAGATTAAGAAAATTGAGAATTTGAACAGCAGACAGGTTACCTTTTCCAAGAGGAGAAATGGGTTGATCAAGAAGGCCAGAGAATTGTCTGTTCTATGTGATGCTGAGGTTGCTGTCATCATATTCTCTAGCACTGGCAAGCTTTATGAGTTTTCAAACACAAGCATGGAGCATACCCTATCAAGGTATATGAAAGGCACCGAATTGGATTCTGCAGAGCAGCCTATTGATGTGGCCCCAAAAGATGTTACGGTTATGGAGCCTGATACAAACCTTTTGATGGATGAAATAACAAAGCTTCGATCTGCATACTCAAATATGAAGGGTAAGGAGCTTGATGGATTGAGCCTTAAAGAACTGCAGCACCTAGAAAAGCAGCTGAGTGAAGGGATATTAGCTGTCAAAGACAGGAAGGAACAAGTACTTGTAGAACAACTTACAAGGTCCAGGATACAGGAGCAAAAAGCTATGCTGGAAAATGAAGTTNTGCGCAAACAGCTTGAGGAGATACAAAATAAAACAAAGACACAGTTCCTTGAATTCAGTTGTTTGGATAGAACATTTTCCAAGAACAGTTCAAAATCCCTTTTCAATTGTGCTTCAGAGGAAAATGGCCACTCAGATACTTCTTTGCAGTTAGGGTTGTCAACACCAGATTATGGTCATCAGAGGAAAGGGTGGAAAATAGAACCTTGCAACGACTCAGGGAGTCAAGTGGCTTCACAGTGA 747 0.4163 MGRGKIEIKKIENLNSRQVTFSKRRNGLIKKARELSVLCDAEVAVIIFSSTGKLYEFSNTSMEHTLSRYMKGTELDSAEQPIDVAPKDVTVMEPDTNLLMDEITKLRSAYSNMKGKELDGLSLKELQHLEKQLSEGILAVKDRKEQVLVEQLTRSRIQEQKAMLENEVXRKQLEEIQNKTKTQFLEFSCLDRTFSKNSSKSLFNCASEENGHSDTSLQLGLSTPDYGHQRKGWKIEPCNDSGSQVASQ* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0315 248 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra8g0315 248 Pfam K-box region 94 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra8g0315 248 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 237 - -
Vra8g0315 248 MobiDBLite consensus disorder prediction 210 248 - -
Vra8g0315 248 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Vra8g0315 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vra8g0315 248 PANTHER BNAC04G24260D PROTEIN 1 237 - -
Vra8g0315 248 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Vra8g0315 248 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vra8g0315 248 Coils Coil 170 179 - -
Vra8g0315 248 Coils Coil 154 168 - -
Vra8g0315 248 Gene3D - 14 88 IPR036879 GO:0003677|GO:0046983
Vra8g0315 248 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vra8g0315 248 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vra8g0315 248 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vra8g0315 248 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vra8g0315 248 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0315 Vra-Chr8 4064439 4068734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0315 1 241 MADS-box Gene Family AT5G13790 46.154 6.24e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vra8g0315 K-box 3.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0315 - - gmx:100792278 407.912