Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0312 ATGGAGGAAGAAACTGAGAAAGGGTTGTTGGAGTGTGTCAGAAAATTCTCAACAGCACCGTTTTTGTTGAAGACATATATGTTGGTTGAGGATCCTACGACCAATGATGTTGTGTCGTGGAATGATGACGGAACAACGTTTGTGGTGTTGCAACCTGCAGAGTTTGCTCGTGATCTTCTTCCGACTCTCTTCAACCATTGCAACTTCTCTAGCTTTGTTCGCCAGCTCAATACTTATGGTTTTCGTAAAGTTAGAAGAAGCAGATGGGAGTTTTGCAACGAGCGATTCAGAAAGGGAGAGAAAGAACTGTTATGCGAGATGAGACGTAAGAAGTCATGGGTAAGGAAGAAGCAAAATGAAAGGTCCTTAGCATCAAGGTTTTCTTCAAATTATGCAGTTCTGATGGATGAAAACAAGCGACTGAAGAAGGAGAATAAGGTGTTGCAGTCAGAGCTTACAACCATCAAGACCAAGTGCAGGGACTTGCTCGATTTGGTCACCAAATATTCATCTGCAAAGCCAGAACGACTCAGATTCGAACAAGTCCAAGAAGAATCATAG 561 0.426 MEEETEKGLLECVRKFSTAPFLLKTYMLVEDPTTNDVVSWNDDGTTFVVLQPAEFARDLLPTLFNHCNFSSFVRQLNTYGFRKVRRSRWEFCNERFRKGEKELLCEMRRKKSWVRKKQNERSLASRFSSNYAVLMDENKRLKKENKVLQSELTTIKTKCRDLLDLVTKYSSAKPERLRFEQVQEES* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0312 186 Gene3D - 13 111 IPR036388 -
Vra8g0312 186 Coils Coil 124 158 - -
Vra8g0312 186 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-3 5 174 - -
Vra8g0312 186 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 174 IPR027725 -
Vra8g0312 186 SUPERFAMILY "Winged helix" DNA-binding domain 18 110 IPR036390 -
Vra8g0312 186 SMART hsfneu3 17 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra8g0312 186 Pfam HSF-type DNA-binding 21 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra8g0312 186 PRINTS Heat shock factor (HSF) domain signature 21 44 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra8g0312 186 PRINTS Heat shock factor (HSF) domain signature 59 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra8g0312 186 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0312 Vra-Chr8 3994118 3997372 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0312 19 169 HSF AT2G41690 53.631 2.17e-59 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vra8g0312 HSF_DNA-bind 3.5e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0312 K09419 - qsu:112013936 243.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0285 3 3320860 3322973 Vra8g0312 8 3994118 3997372 PCT