Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0307 ATGAAGAATAAAGAACCGTTTCAAACCTTCTTCTTCCTCTCCACCCTTTTGCTGCTTTTTATCTCCTCTGCAAAGGGAAAGTGCCCACCATCATTTCTTTGTGGGAACCTGGGCACCATGTACTTCCCTTACACTGACACCAAACACCCTCATTGTGGCTTGTTGGTGATGCATGGCTGCCATGACCGTGACCCAGATGCGATTAAAACGGTTAAGAACAAAGGAGAATGGTTTTTCATCACACGTGATCCAAACACAAACATCCTTGTCTTCAGAGATGATGAACTTCGTACCTTGTTGCTGACACGAAGATGTGGGGTGTTCGGCAAAAACTACACCAGTTTGGACACCCCTTCTCCTTTCCTTTCACTTCATTTTAAGACTGCTACTTTCTTCATATGCAACCGCACCCTCAACATCAATCCTCCTTCTTCAGCATTTTATAAATCTACAATATGTCCGGATGAGGACATCTTCTATGTCACATCTAATGTTGATGACTCCTTCAGTTACAATTCCGAAGAGCTTCATGGTTCTTATTTTGAACAGTGTTCAATGGTTAGACTTCCAATAAGAGATCCAGAGCTTGTACCTAACTCAAATGGAAGCCTCTTTGACTATGTATCAGCTGATATTCCTGTTAGAACGGAAGTGTCTAATGATTGTTCTTCTTGTCACCGTGTTAGAGGAGGCCAGTGTCAACTTGACAGCCAAGGGAAATTCTTATGCATACAAGAGAAAACTAGTAGAAAGATGAAGATAGTGGTAGCAGCTACATCAGCTGCTGGAGCAATGGGAATTTTGATGGTGTTGGCTTGCATCTTACGAAGATACTATTGCCACAAGAAGAATCCNACTTACATAATGATTGAAAACTTTCTGAAGCAACATGGACACCTTTCAGCCAAAAGGTACAGTTACTTGGAGGTAAAGAAAATGACCAACTCCTTCAGAAACAAATTAGGCCAAGGAGGGTTTGGTAGTGTATACAAAGGGAGGTTACAAAATGGAAGTCTTGTGGCAGTTAAGGTTTTAAGTAAGTCAAAGGGTGATGGAGAAGAATTCATCAATGAAGTTGCTAGTATTAGCATGACTTCTCATGTTAACATTGTCAGTTTACTGGGGTTTTGCTTGGAAGGCTCCAAAAGATTTCTCATATACGAGTACATGCCCAATGGGTCCCTTGAAAAGTTCATATATGAAGAGAAAGATCCTTTAAAGCTTAAACTAACTTTGAATTGCAGTACAATGTACAATATTGCCATTGGTGTTGCTCGAGGACTGGAGTACTTGCACAAGGGTTGTAACACCAAAATCTTGCATTTTGACATAAAACCTCACAATATACTACTAGATGAGTTTTTTTGCCCCAAAATATCAGATTTTGGACTTGCTAAAATATGTCCTAGAGAAAAAAGTATTGTATCAATGATGGTTGCCAGAGGAACCATAGGATATATCGCTCCTGAATTGTTCTGCAGAAATTTTGGTGGAGTGTCACATAAATCAGATGTATACAGTTATGGAATGATGGTTTTGGAAATGCTTGGTGCTAGGGAGAATAATAATCGCAGAGTTGATTTTTCAAGTGAAAATTACTTTCCACATTGGATTTACAACCATCTTGAATCAGAACAAGATCTTCAATTTCGATGCACCAAAAATCAAAATGATGAAGAAATGGTGAGAAAAATGACTATTGTAAGTTTGTGGTGCATACAGACCGACCCTTCAAATCGACCTGCAATGACTAAAGTGGTGGAAATGATGGAAGGAAGCATTAGCTCTGTGCAAATTCCTCCCAAATCTTTCCTTTATTCATCTTCAGTTCCCCAATACCAATCAAGTGATTCTTCATAG 1860 0.3946 MKNKEPFQTFFFLSTLLLLFISSAKGKCPPSFLCGNLGTMYFPYTDTKHPHCGLLVMHGCHDRDPDAIKTVKNKGEWFFITRDPNTNILVFRDDELRTLLLTRRCGVFGKNYTSLDTPSPFLSLHFKTATFFICNRTLNINPPSSAFYKSTICPDEDIFYVTSNVDDSFSYNSEELHGSYFEQCSMVRLPIRDPELVPNSNGSLFDYVSADIPVRTEVSNDCSSCHRVRGGQCQLDSQGKFLCIQEKTSRKMKIVVAATSAAGAMGILMVLACILRRYYCHKKNPTYIMIENFLKQHGHLSAKRYSYLEVKKMTNSFRNKLGQGGFGSVYKGRLQNGSLVAVKVLSKSKGDGEEFINEVASISMTSHVNIVSLLGFCLEGSKRFLIYEYMPNGSLEKFIYEEKDPLKLKLTLNCSTMYNIAIGVARGLEYLHKGCNTKILHFDIKPHNILLDEFFCPKISDFGLAKICPREKSIVSMMVARGTIGYIAPELFCRNFGGVSHKSDVYSYGMMVLEMLGARENNNRRVDFSSENYFPHWIYNHLESEQDLQFRCTKNQNDEEMVRKMTIVSLWCIQTDPSNRPAMTKVVEMMEGSISSVQIPPKSFLYSSSVPQYQSSDSS* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0307 619 Pfam Protein kinase domain 319 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0307 619 ProSiteProfiles Protein kinase domain profile. 315 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0307 619 Gene3D Transferase(Phosphotransferase) domain 1 390 600 - -
Vra8g0307 619 PANTHER RUST RESISTANCE KINASE LR10-RELATED 34 617 IPR045874 GO:0004672
Vra8g0307 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 439 451 IPR008271 GO:0004672|GO:0006468
Vra8g0307 619 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 34 617 - -
Vra8g0307 619 SMART serkin_6 315 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0307 619 ProSitePatterns Protein kinases ATP-binding region signature. 321 343 IPR017441 GO:0005524
Vra8g0307 619 SUPERFAMILY Protein kinase-like (PK-like) 298 590 IPR011009 -
Vra8g0307 619 Gene3D Phosphorylase Kinase; domain 1 291 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0307 Vra-Chr8 3926526 3929456 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0307 18 619 Receptor kinase-like Gene Family AT5G38260 39.742 4.48e-132 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vra8g0307 Pkinase 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0307 - - gmx:100807312 1004.97