Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0303 ATGCTGTTTTCAGTGATGAGAATTCTTTGCTTGCTGCCTTTTCTTCTCACTTTGTATCTGTCAAAATCTCTGCTTGTTGGTGGTGAGTTGCATGAACAAACTTTACTACCTTCCATCAACCAAACTCTCAGAGTTCCAGGCTGGAATGCCAGCACCTCAGATTACTGCTCCTGGAAAGGTGTCATCTGTGGCAACCTCTCACTGGTGGAGAAGCTCGTTCTCTCTAATCAGAATCTTGGAGGCAATGTAAGTTCAATTTCCAGCCTCAAAGCTTTGAAGTGGCTTGACCTTTCAAACAATAACTTTGAAGGGATGATTCCAGCTGCTTTTGGAAATTTATCCCATCTTGAATATCTTGACTTGTCTTCAAACCAGTTTGAAGGTTCAATTCCACCACAATTGGGAGGCCTTAAAAGCCTCAAATCATTGAACTTTTCCAATAACATGCTGGTGGGAGAGATACCTAAGGAACTTCAAGGCCTTGAGAGTTTACAGGATTTTCAAATTTTCAACAATCTTCTGAGTGGTTCCATACCCTCCTGGGTTGGGAACTGGACCAATCTGAGAGTTTTCGCTGCTTATGAGAATCATTTCAATGGAAGGATTCCAGATGCTCTGGGATTCATTTCTGAGCTTAAAACACTGAACCTGCATTCAAACCAGCTTGAAGGTCCTATACCAGGAAGCCTCTTTTCTGCATGGCAGCTAGAAGTTCTGATCCTCAGTCAGAACAACTTGAGTGGTGAAATTCCGGAGGAAATCGGGAACTGTCGAACTCTTCTCAGTGTTCGAATTGGCAACAACAATCTACAAGGTAATATTCCTAAGAGTGTTGGAAACCTTACTAGCCTTGCTTACTTTGAAGCTGATGATAATAATCTTTCTGGTGAGTTAGTATCAGAGTTTTCTCTGTGTTATAATCTCACCTTCTTGAACTTGGCTTCAAATGGATTTACTGGAACAATTTCACCAGAATTTGGAAAGCTTATGAACCTGCAGGTGCTGATGCTTTCTGAAAATCTCCTTTATGGTGATATTCCAGAATCGATTCTGCAGATCAAGAGTCTTACGATTCTTGACTTAAGCAATAACAGGTTAAATGGAACAATACCAAATGGAATCTGTGACATCGCTCAGTTGCAGAAGCTGCTGTTGGATCAGAATTTCATAAGAGGAGTGATCCCTCAGGAAATCGGAAGGTGTAGAGAACTTCTTGAATTGAAATTGGGGAGTAACAATCTGACAGGAACTATTCCCTCTCAGATTGGTGACATGCAAAACTTGGAGATAGCCTTAAATTTGAGCTACAACCATCTTCAAGGACAATTGCCCCCAGAATTAGGAAGACTAGTCAAACTTGGTTCTCTGGATATTTCCAACAATAATCTCTCAGGTAATATCCCTGATACATTTACCGGGATGTTGGGCTTGATTGTCATTAACATGTCAAATAATCAGCTCACTGGTAAATTGCCAAAGTCTCCATCATTCCTGCATAATCCTGCTTCAAGTTATTTGGGCAACAGAGGGCTTTGCGGTGAGCCATTGAACATTACATGTGAAGATATTCCCTATAATTACATAGCTGTGGAAAAAAGTAATAAATTTACTTACAAAACCATAATATATATACTTGGACCATTTCTTCTGGCTTTTATGTTATTTGCTGTAGTTGCCTTTGTAAACAGAGTGTGTCAAAGGAAAGTAGCAAATGTTCCTGAGATAGAATGTGCTGAAATCATTAAGGAACCATATATAATATCAGCAAATGTTTTTGCTGACAATCTAAGAGAAGAAGTAGACCTTGAAGCGGTTGCTAAAGCAACTCTTGAAGAATCTAATAAGCTTAACAGTGGCACTTTCAGTGCACTTTACAAGGCAGTGATGCCCTCTGGGGTACTCTTACTTGTAAGGAAAATAATCCCTATGGACATGACAGTAATGGAGCGCCAGAACAACATCATTTCAGAGCTTCAAAGGCTTAGAAAAATGTCCCATGAACATGTAATGAAACCCGTTGGATATGTCATTTGTAGCGATGCTGCTCTTCTCATATATCAGTACATATCCTGTGGAACATTGGCTCAACTTCTTCATGACCCTGCAATGCAACCTGAATATCAGCTGGATTGGCCTGCTAGGTTCTCTATTGCAATGGGAATAGCAAAAGGTTTGATTTTCCTTCATCAGAAGGAAATCATCCACCTCGACATTTCTTCTAGCAATATTCTTCTAGATGCAAATTATGGGCCACTGATTGGGGACATCGAAATATCAAAGTTCTTAGATGAAACTAAAGGAAGTGATAGTATTGTCCCATATGCTGGTTCTTTTGGTTACGTTCCACCAGAATATGCATACACAATGCAAGTGACAAGAGCTGGAAATATTTATAGCTTTGGTGTGATACTGATGGAGATTATAACTTCGAGAGAAGCATTTGATGAGGGTAATGGAGAAGGTGTAGACTTGGTGAAGTGGGTTAAAGAAGCTGCAGAAAGAGGTGAAACTCCAGAGCAGATAATGGATGCAAAGCTTAGCTCAGTGTGCGATGATTGGAAGAAAGAAATGGTTGAAACTCTGAAAGTGGCCTTGTTCTGCACTCACATCAGGCCAAATAACCGACCAAACATCAACAGCGTTACGGAAATGCTTCGTGCAATAAGGAACCAAATTGATTTCTGTGTCGATTGA 2694 0.4024 MLFSVMRILCLLPFLLTLYLSKSLLVGGELHEQTLLPSINQTLRVPGWNASTSDYCSWKGVICGNLSLVEKLVLSNQNLGGNVSSISSLKALKWLDLSNNNFEGMIPAAFGNLSHLEYLDLSSNQFEGSIPPQLGGLKSLKSLNFSNNMLVGEIPKELQGLESLQDFQIFNNLLSGSIPSWVGNWTNLRVFAAYENHFNGRIPDALGFISELKTLNLHSNQLEGPIPGSLFSAWQLEVLILSQNNLSGEIPEEIGNCRTLLSVRIGNNNLQGNIPKSVGNLTSLAYFEADDNNLSGELVSEFSLCYNLTFLNLASNGFTGTISPEFGKLMNLQVLMLSENLLYGDIPESILQIKSLTILDLSNNRLNGTIPNGICDIAQLQKLLLDQNFIRGVIPQEIGRCRELLELKLGSNNLTGTIPSQIGDMQNLEIALNLSYNHLQGQLPPELGRLVKLGSLDISNNNLSGNIPDTFTGMLGLIVINMSNNQLTGKLPKSPSFLHNPASSYLGNRGLCGEPLNITCEDIPYNYIAVEKSNKFTYKTIIYILGPFLLAFMLFAVVAFVNRVCQRKVANVPEIECAEIIKEPYIISANVFADNLREEVDLEAVAKATLEESNKLNSGTFSALYKAVMPSGVLLLVRKIIPMDMTVMERQNNIISELQRLRKMSHEHVMKPVGYVICSDAALLIYQYISCGTLAQLLHDPAMQPEYQLDWPARFSIAMGIAKGLIFLHQKEIIHLDISSSNILLDANYGPLIGDIEISKFLDETKGSDSIVPYAGSFGYVPPEYAYTMQVTRAGNIYSFGVILMEIITSREAFDEGNGEGVDLVKWVKEAAERGETPEQIMDAKLSSVCDDWKKEMVETLKVALFCTHIRPNNRPNINSVTEMLRAIRNQIDFCVD* 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0303 897 Gene3D Transferase(Phosphotransferase) domain 1 690 894 - -
Vra8g0303 897 Gene3D Phosphorylase Kinase; domain 1 576 688 - -
Vra8g0303 897 SMART LRR_typ_2 89 112 IPR003591 -
Vra8g0303 897 SMART LRR_typ_2 353 377 IPR003591 -
Vra8g0303 897 SMART LRR_typ_2 450 473 IPR003591 -
Vra8g0303 897 SMART LRR_typ_2 235 257 IPR003591 -
Vra8g0303 897 SMART LRR_typ_2 137 160 IPR003591 -
Vra8g0303 897 SMART LRR_typ_2 113 136 IPR003591 -
Vra8g0303 897 SMART LRR_typ_2 209 233 IPR003591 -
Vra8g0303 897 SUPERFAMILY L domain-like 53 227 - -
Vra8g0303 897 Gene3D Ribonuclease Inhibitor 278 524 IPR032675 -
Vra8g0303 897 Gene3D Ribonuclease Inhibitor 178 277 IPR032675 -
Vra8g0303 897 Gene3D Ribonuclease Inhibitor 30 177 IPR032675 -
Vra8g0303 897 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 6 888 - -
Vra8g0303 897 ProSiteProfiles Protein kinase domain profile. 610 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0303 897 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE TYROSINE-PROTEIN KINASE PXC3 6 888 - -
Vra8g0303 897 Pfam Leucine rich repeat 70 126 IPR001611 GO:0005515
Vra8g0303 897 Pfam Leucine rich repeat 307 366 IPR001611 GO:0005515
Vra8g0303 897 SUPERFAMILY Protein kinase-like (PK-like) 609 890 IPR011009 -
Vra8g0303 897 ProSitePatterns Tyrosine protein kinases specific active-site signature. 733 745 IPR008266 GO:0004672|GO:0006468
Vra8g0303 897 SUPERFAMILY RNI-like 172 518 - -
Vra8g0303 897 Pfam Protein kinase domain 611 881 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0303 897 Pfam Leucine rich repeat N-terminal domain 47 63 IPR013210 -
Vra8g0303 897 PRINTS Leucine-rich repeat signature 356 369 - -
Vra8g0303 897 PRINTS Leucine-rich repeat signature 450 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0303 Vra-Chr8 3874040 3877278 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0303 6 889 Receptor kinase-like Gene Family AT2G41820 54.821 0.0 964
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vra8g0303 Pkinase 8.1e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0303 - - adu:107492611 1073.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0303 8 3874040 3877278 Vra8g0303 8 3874040 3877278 ECH