Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0299 ATGGGGAACAGTTGCGTGACTCCGGTCAGGTTCAGACGGGAGAGGAGGCAGAGGAAGCGGGAGGAAGCGGCGGCCAAGAAGCTCGTCGTGCTCAAGGACCCCACGGGCCGGGACATTGGGCTGCGCTATGAATTGGGCCGGGAGCTGGGCCGAGGGGAGTTCGGCGTGACGTACCTGTGCCGTGATAAGGAGACGAAGGAGGAGTGGGCGTGCAAATCGATATCCAAGAAGAAACTGCGAACCGCCATTGATATCGAGGATGTGCGGAGGGAGGTGGAGATCATGCGACACTTGCCCAAACACCCCAACATCGTCTCGCTCAAGGACACATTCGAAGACGACAGTGCTGTTCACCTCGTCATGGAGCTCTGCGAGGGTGGCGAGCTCTTCGACCGCATTGTCGCGCGCGGCCACTACACCGAGCGCGCCGCCGCAACCGTCGTCAAAACCATCGTCGAAGTTGTCCAGATGTGCCACAAACATGGTGTGATGCATAGAGATCTCAAACCTGAGAACTTTTTGTTTGGAAACAAGAAGGAGTCAGCACCTCTGAAAGCAATTGACTTTGGATTGTCGGTTATCTTCAAACCAGGTGAAAAGTTTAATGAGATAGTTGGAAGTCCATATTACATGGCTCCTGAAGTATTAAAGCGTAATTATGGCCCTGAAGTAGATATTTGGAGTGCTGGAGTAATTCTTTACATCTTACTCTGTGGTGTCCCACCTTTTTGGGCAGAAACTGAACAGGGAGTTGCTCAAGCAATTATTCGGTCTGTTGTTGATTTTAGAAGGGAACCATGGCCCAAGGTTTCTGATAATGCCAAAGACCTTGTGAAGAAGATGCTTGATCCTGACCCAAAGCGCCGGCTTACTGCACAAGAAGTGTTAGATCATCCGTGGTTACAGAATGCAAAGAAAGCTCCTAATGTTTCATTGGGAGAAACTGTCAGATCAAAGCTCATGCAATTTTCTGTAATGAACAAGCTTAAGAAAAGAGCTTTGAGGGTGATTGCAGAACATTTGTCTTCAGAAGAAGCTGCTGGAATAAAAGAGGGATTCGACCTGATGGATACAGGTAATAATGGCAAAATTAACATTGATGAGCTGCGAGAAGGGTTGAAGAAACTAGGTCACCAAATTCCTGACGGAGATGTACATATACTTATGGAAGTTGGTGATTCAGACAAAGATGGATATCTAGATTATGGAGAGTTTGTTGCCATATCTATTCATCTGAGAAAGATAGACCATGATGAGCACATTCACAAAGCCTTCCAATTTTTTGATAATAATAAAAGTGGATATATTGAAATTGAAGAGTTACATAATGCCTTAGCTGATGAGGTTGAAACAAACATCGACGAAGTCATCAATGCAATTATGCATGATGTTGACACAGATAAGGATGGAAAAATAAGCTATGAGGAATTTGCTACAATGATGAAGGCTGGCACAGATTGGAGAAAAGCATCAAGGCAGTATTCAAGAGAGAGGTTTTCTAGCTTAAGTCAGAAGTTGATCAAGGACGGATCTTTGCAGTTAAACAATGGCGGTAGCGGACTTTAG 1566 0.4585 MGNSCVTPVRFRRERRQRKREEAAAKKLVVLKDPTGRDIGLRYELGRELGRGEFGVTYLCRDKETKEEWACKSISKKKLRTAIDIEDVRREVEIMRHLPKHPNIVSLKDTFEDDSAVHLVMELCEGGELFDRIVARGHYTERAAATVVKTIVEVVQMCHKHGVMHRDLKPENFLFGNKKESAPLKAIDFGLSVIFKPGEKFNEIVGSPYYMAPEVLKRNYGPEVDIWSAGVILYILLCGVPPFWAETEQGVAQAIIRSVVDFRREPWPKVSDNAKDLVKKMLDPDPKRRLTAQEVLDHPWLQNAKKAPNVSLGETVRSKLMQFSVMNKLKKRALRVIAEHLSSEEAAGIKEGFDLMDTGNNGKINIDELREGLKKLGHQIPDGDVHILMEVGDSDKDGYLDYGEFVAISIHLRKIDHDEHIHKAFQFFDNNKSGYIEIEELHNALADEVETNIDEVINAIMHDVDTDKDGKISYEEFATMMKAGTDWRKASRQYSRERFSSLSQKLIKDGSLQLNNGGSGL* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0299 521 SMART efh_1 348 376 IPR002048 GO:0005509
Vra8g0299 521 SMART efh_1 420 448 IPR002048 GO:0005509
Vra8g0299 521 SMART efh_1 456 484 IPR002048 GO:0005509
Vra8g0299 521 SMART efh_1 384 412 IPR002048 GO:0005509
Vra8g0299 521 ProSitePatterns EF-hand calcium-binding domain. 393 405 IPR018247 -
Vra8g0299 521 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Vra8g0299 521 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 32-LIKE 23 498 - -
Vra8g0299 521 PANTHER SERINE/THREONINE-PROTEIN KINASE 23 498 - -
Vra8g0299 521 Gene3D Transferase(Phosphotransferase) domain 1 129 309 - -
Vra8g0299 521 SUPERFAMILY EF-hand 325 494 IPR011992 -
Vra8g0299 521 SMART serkin_6 43 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0299 521 CDD STKc_CAMK 42 300 - -
Vra8g0299 521 Pfam Protein kinase domain 43 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0299 521 Pfam EF-hand domain pair 361 407 IPR002048 GO:0005509
Vra8g0299 521 Pfam EF-hand domain pair 419 482 IPR002048 GO:0005509
Vra8g0299 521 ProSitePatterns EF-hand calcium-binding domain. 465 477 IPR018247 -
Vra8g0299 521 CDD EFh 420 482 IPR002048 GO:0005509
Vra8g0299 521 Gene3D Phosphorylase Kinase; domain 1 45 128 - -
Vra8g0299 521 ProSitePatterns EF-hand calcium-binding domain. 429 441 IPR018247 -
Vra8g0299 521 SUPERFAMILY Protein kinase-like (PK-like) 42 315 IPR011009 -
Vra8g0299 521 ProSiteProfiles EF-hand calcium-binding domain profile. 344 379 IPR002048 GO:0005509
Vra8g0299 521 ProSiteProfiles EF-hand calcium-binding domain profile. 452 487 IPR002048 GO:0005509
Vra8g0299 521 ProSitePatterns Protein kinases ATP-binding region signature. 49 72 IPR017441 GO:0005524
Vra8g0299 521 ProSiteProfiles EF-hand calcium-binding domain profile. 416 451 IPR002048 GO:0005509
Vra8g0299 521 ProSiteProfiles Protein kinase domain profile. 43 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0299 521 Gene3D - 310 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0299 Vra-Chr8 3825618 3830241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0299 1 514 EF-hand Containing Proteins AT5G19450 74.480 0.0 825
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vra8g0299 Pkinase 1.5e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0299 K13412 - gmx:100778471 895.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0256 3 2909446 2913754 Vra8g0299 8 3825618 3830241 PCT