Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0291 ATGATTCAACTTCAGAAACCCCTTCCGATTGCATTCCTCTTTCTTCCACTTTTAAAACTCATGGCTGAATCGCTTCTTTTCAGCTCCGCAGAATCGCTCCTCGGAAAGCTTGCTTCTGCTGCCCTTCAAGAAGCTTCTCTAGCGTTTGGTGTGAACCGCGACCTTGAATTGATGAAAGAAACTATGACATTCATCAGAGGTGTACTCCTAGATGCTGAGAAAAAGAATTCACAGAGCAGTGCACTAAAAGAATGGTTGATTCAGGTTAAGTGCGTGTTTTCTGATGCTGAAGACATAGTCGATGATTTTGAGTGCGAAGCTTTACGAAAACACACTGTCAACACCTATGGAAGCTGTTCAAGAAAGGTATGTCGTTTCTTCTCATCAAGTAATCCTGTTGTTTATCGTCTTAGAATGGCGCATCACATTCAAGACATCAACATCAGGTTGACCAAACTTGCATCTCAAAGAAGCATGTTTAGCCTTCAAATCATTGACCAAGACACTCGTGTCGTGCACGTGAGGGAAATGACTCATTCTCATGTAAACCCTTCTAATGTTATAGGGAGAGAACATGATAAACAAGAAATAATAAAACTTCTGGTGCAAGGTGATCATGGCCAAAGTCTCTCAATTATTCCCATTGTGGGAATGGGAGGCTTGGGAAAGACCACACTTGCTAAGTTGGTCTTCAATGACCCCATAATTCATGCATGTTTTCCATTGAGAATGTGGGTGTGTGTCACTAATGAATTTGAACTTAGGAATGTGCTCATTAAAATCCTCAATTCTGTTCCAAATCCAACTAGGGAAAACTTCAATAACTTTGAGATAGAGCAACTTCAAATTCTTTTGAGAAATACACTTGAAGGGTATAAGTCCTTGCTTGTGTTGGATGACGTGTGGAACGAGGATCCTGCAAGATGGGATGAGTTGAGAGAAATAATAGATATAGGTGTTGAAGGCAGTAAAATCCTAGTGACTACTCGTAGTCAAAAAGTAGCTGCCATTATGCACACAAAATCCTCAAAGTCGTACCTTCTAGGATGTCTCTCTGAAAAGGATTCTCTTTCTCTATTTATGAAATATGCTTTTGAAGATGGAGATGAGATGAAACATCCACAACTATTGAAAATTGGGAAAGAAATAGTAAAAAAATGTGGAGGGTTACCATTGGCTGTGAAAACGGTGGGGAGTTCACTGTTCTTAATGGTTGATGAGAGAGAGTGGGAAAGTGTAAGAGACAATGAGATTTGGAATTTAAAACAAAATGTAAAAGGCATTTTGCCTGCTCTCAAACTAAGTTACGATCAACTCCCTTCATACTTAAAACCCTGTTTTGCTTCTTTGTCCCTTTACCAAAAAGACATTTATTTTTATAGTTCTCAAGTTTGTATGTTATGGGGAGGACTTGGTTTTCTTCCACCACCAAAGGCAAGTGAATCAATGGCTAATGTTGCCACTCAATTGTTGCATGAGCTATGGTCAAGATCTTTTCTTTCAGAATATGAAGACTTCGGAGGTGATTGTCGGTTTAAATTACATGATTTGGTGTTTGATCTTGCCATATATATTGCAAAGGGTGAGTTTGATATAATACACCCAAATCCAAACTTATACAAGAATGCCCATCATTTGTTATTTATGAATGATAATTTGCTTGATCAAGCTCTTCTTCCCTCAAGTCTAAGAATTTTCATTTTTACTGGGGGACCTAGTAATGAAAATTTCTTGAATACATTGGTTTCAAGGTGCAAATTCTTGAGGATTTTAATCTTAGATTGGTCTGAATACGTAAGTCTACCTCGTTTCATCGGAAAGTTGAAACATTTAAGATTTCTCAGCCTTTGGAACAATGAAAACCTTATGGAAGTCCCTGATTCAGTTTGCAAACTTCAAAATTTGCAAACTTTGAACCTTGAGGGGTGCATAAAGCTACAAAAGTTACCCAAAGGACTAGCAAATCTAGTAAGCCTTCGTTACCTAGGTATAACCACCATAGAACCTACTTTTCCAGAAAAAGAAGTTGCAAGTTTGACTTCTTTAGAAGATTTAAGGTTTTGTCGTTGTGATAATTTGGAGTCATTGTTCAAAGGAATACAACTGCACACTCTTAAAGGATTGTCTTTACAAGATTGTAAAAGTCTAAAGATGGTGTCGTTCCATGCCATAAAAAATTTAGAGGTTTTAGTGATTGCACAGTGCAACAAGTTGGAATTGTCAATGGGCCTTAGCAACGAAATCCTTGATTCAAGGTTGAAACTTCTCATTCTTAGAGGCTTGCCAAGTCTAGCAACATTGCCTCGGTGGCTTCAAGGATCTGCCAACTCTTTACAGTCCTTAGTTATTGAAGAATGCATGAATCTTGAGGAGCTTCCCGATTGGCTACCAACTCTAAATTGTCTCCAACAACTTGTAGTTCGATATTGTCCAAACCTATTATCACTCCCTGATAACATACATCACGTCACGAATCTAAAAGTGATTAATGTCACTGGTTCTTCTGAATTATGGAAAAGATACAGGCCAAGAGTTGGACAGGATTGGCACAAGATATCTCATGTCAATCTTGTTTGCTATGATGAATCAGAAAATGAAAAAGAATTCTCCTAA 2613 0.3816 MIQLQKPLPIAFLFLPLLKLMAESLLFSSAESLLGKLASAALQEASLAFGVNRDLELMKETMTFIRGVLLDAEKKNSQSSALKEWLIQVKCVFSDAEDIVDDFECEALRKHTVNTYGSCSRKVCRFFSSSNPVVYRLRMAHHIQDINIRLTKLASQRSMFSLQIIDQDTRVVHVREMTHSHVNPSNVIGREHDKQEIIKLLVQGDHGQSLSIIPIVGMGGLGKTTLAKLVFNDPIIHACFPLRMWVCVTNEFELRNVLIKILNSVPNPTRENFNNFEIEQLQILLRNTLEGYKSLLVLDDVWNEDPARWDELREIIDIGVEGSKILVTTRSQKVAAIMHTKSSKSYLLGCLSEKDSLSLFMKYAFEDGDEMKHPQLLKIGKEIVKKCGGLPLAVKTVGSSLFLMVDEREWESVRDNEIWNLKQNVKGILPALKLSYDQLPSYLKPCFASLSLYQKDIYFYSSQVCMLWGGLGFLPPPKASESMANVATQLLHELWSRSFLSEYEDFGGDCRFKLHDLVFDLAIYIAKGEFDIIHPNPNLYKNAHHLLFMNDNLLDQALLPSSLRIFIFTGGPSNENFLNTLVSRCKFLRILILDWSEYVSLPRFIGKLKHLRFLSLWNNENLMEVPDSVCKLQNLQTLNLEGCIKLQKLPKGLANLVSLRYLGITTIEPTFPEKEVASLTSLEDLRFCRCDNLESLFKGIQLHTLKGLSLQDCKSLKMVSFHAIKNLEVLVIAQCNKLELSMGLSNEILDSRLKLLILRGLPSLATLPRWLQGSANSLQSLVIEECMNLEELPDWLPTLNCLQQLVVRYCPNLLSLPDNIHHVTNLKVINVTGSSELWKRYRPRVGQDWHKISHVNLVCYDESENEKEFS* 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0291 870 PANTHER DISEASE RESISTANCE PROTEIN RP 47 820 IPR044974 GO:0006952
Vra8g0291 870 CDD RX-CC_like 28 155 IPR038005 -
Vra8g0291 870 SUPERFAMILY L domain-like 504 850 - -
Vra8g0291 870 PRINTS Disease resistance protein signature 212 227 - -
Vra8g0291 870 PRINTS Disease resistance protein signature 288 302 - -
Vra8g0291 870 PRINTS Disease resistance protein signature 387 401 - -
Vra8g0291 870 PRINTS Disease resistance protein signature 630 646 - -
Vra8g0291 870 Gene3D - 169 344 IPR027417 -
Vra8g0291 870 Gene3D - 350 440 IPR042197 -
Vra8g0291 870 Pfam Rx N-terminal domain 31 118 IPR041118 -
Vra8g0291 870 PANTHER OS08G0543100 PROTEIN 47 820 - -
Vra8g0291 870 Gene3D - 30 144 - -
Vra8g0291 870 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 448 IPR027417 -
Vra8g0291 870 Pfam NB-ARC domain 191 437 IPR002182 GO:0043531
Vra8g0291 870 Gene3D Ribonuclease Inhibitor 559 854 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0291 Vra-Chr8 3764380 3769189 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0291 213 764 WRKY Transcription Factor Family AT5G45050 23.343 3.19e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0291 - - vra:106771654 1407.89