Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0288 ATGCTTGGACAAGGGAATTGTCACCTTAGATCATCATTCTTGCTATGTATGCTCATTGGCCTCTTGATGCATTCTGTTGTGGGTGCTGAGATTCCCTTGGGTTCTAAACTTTCTGTGGTTGACAATGATTATTGGGTTTCCTCCAATGGTGATTTTGCTATTGGATTCTTCAACATTTCCGATCAACCCAACCAGTTTAGTGTTGGAATTAGATTCAATTCCAAGTCTATACCATATAGTCGACGAACTGTGGTTTGGGTTGCTGGGGGTGATGTCACAGTGGGTAACGAGTCCTACTTTGAACTCACTCAAGAAGGGGAACTGGTCCTGTTTGATTCCTTGCATGAAGCTTTTGTTTGGACCTCTGGAACGGGTAACCGATCTGTTGCATCGGCTTCACTCCTTGACAATGGAAATCTTGTTCTAATGGACAAAGAGCAACACATCATTTGGGAAAGTTTTAGGACTCCATCTGATACTCTTCTCCCAGGACAAAGTTTATTCGCTAATGAAAAGCTTCGTGCAGCATCTGCAATCAAGAATAGCAAGTCTAGTTACTATAGTCTTCACATGAATGCTTCTGGGCATTTGGAGCTACATTGGGAAAGTGATGTCATCTACTGGACAAGTGAAAACCCTTCTTCTGCTTCGAATCTCAGTGCTTTCCTTACAACCAGTGGAGCTCTAGAACTTCGAGACCGAAGGTCAAAAGCTGTTTGGTCTGCATTTGGACAGGATCACAATGATTCTGTGAATTATAGATATCTTCGGCTGGATGTGGATGGAAATCTTCGCTTATATTCGTGGGTTGAAAGTTTGGGATTGTGGAGATCGGTCTGGCAAGCTGTTGAGAATCAGTGCAAGGTCTTTGCAACTTGTGGTGAACTTGGTGTCTGTGTCTTCAATGCCTCAGGTTCTGCTGAATGCAAATGCCCGTTTCAGGTAACTGCGGGTAACAACAAATGTTTGGTTCCATTTGAACGAGACTGTGCATCTGGCACCAATATGATAGCATACAAGAACACATATTTATATGCATTCTACCCTCCTGATAATTCTGTTATCACAAGTAATTTGCAGCATTGTGAAGAGTTGTGTCTGAATGATCCACACTGTACAGCTGCAACATTTTCCAATGACAGAACTCCGCTATGTTCAATAAAGAAAACTGGGTATGTCACTGGCTATTCAGATCCATCTGTAAGCTCAATATCATTTGCCAAGAGATGTTCAGGTCCAATTGCTGTAAACCCAAGTTTCACAAAATCTCCTCCTTCTGAACCACCTCCTCCTCTCTGTGTTCCTTGCCTAATGGGGGCTGCCACAGGCACATTTTTCATCATTGTTATTCTCCAGTTGGGAATTGTGTTCATCTTCAAAAGAAAAAACTCTACCAGACAAAAGGCCACTTCAGGTTTCACTGGCACAAACTCAAAGGGTTTAATTGTGTTGTCCTTCTCAGAAATCAAGACCCTCACAGGGGACTTCAAGAATCAAATTGGGCCAAAGGTGTTCAAGGGTTTGCTACCAAACAACCTCCCGATTGCACTCAAAGACCTGAACGCAACCTTAGAAGAAAGGAAGTTCCGGAGTGCTGTTATGAAGATGGGTTGCATCCACCACAAGAACCTTGTGAAACTGGAGGGTTATTGTTGTGAGTTTGATCACAGGTTTTTGGTGTATGAATATTGCAAAAAGGGTTCACTTGACAAGTACATAGATGATCCTGCACTATGCAAGATGCTAACATGGAGAAAGAGAGTTGAGATATGCTCAAATGTGGCAAAAGCCATATGTTATTTGCACTCCGGGTGCAGGGAGTTCATCAGCCATGGAAATTTGAAATGTGAAAACGTTATGTTGGATGAAAACTTGGTGGCGAAGGTGAGTGAATTTGGGTTTGCTATTGCAGATGGGAAGGCAACGTATTGTGGCTTTTCAGCTGAGAAGGATATAGAGGATTTTGGCAAGGTAGTTTTAGCCTTGCTAACCGGATGCCGTGATCATGAACATGTTGAACTTTGTGGGTGGGCGTATAAAGAATGGATGGAAGAGAGGGTGGTGAATGTGATTGATAGAAGAATGGAAGGAGGTTATAATTCAGAGGAACTGGAGCGTGTGTTGAGAATTGCATTTTGGTGCCTTCAAATGGATGAACGCAGAAGACCTTCCATGGGGGAGGTAGTAAGAGTTATTGATGGAACATTGAGTGTTGATCCTCCACCACCTCCTTTTGTGTTTCAGAGGCCATTGCAGGTAGATGATTCAGAGGAAAATGTTTCAGAGTTTGAAGTGTAG 2298 0.4282 MLGQGNCHLRSSFLLCMLIGLLMHSVVGAEIPLGSKLSVVDNDYWVSSNGDFAIGFFNISDQPNQFSVGIRFNSKSIPYSRRTVVWVAGGDVTVGNESYFELTQEGELVLFDSLHEAFVWTSGTGNRSVASASLLDNGNLVLMDKEQHIIWESFRTPSDTLLPGQSLFANEKLRAASAIKNSKSSYYSLHMNASGHLELHWESDVIYWTSENPSSASNLSAFLTTSGALELRDRRSKAVWSAFGQDHNDSVNYRYLRLDVDGNLRLYSWVESLGLWRSVWQAVENQCKVFATCGELGVCVFNASGSAECKCPFQVTAGNNKCLVPFERDCASGTNMIAYKNTYLYAFYPPDNSVITSNLQHCEELCLNDPHCTAATFSNDRTPLCSIKKTGYVTGYSDPSVSSISFAKRCSGPIAVNPSFTKSPPSEPPPPLCVPCLMGAATGTFFIIVILQLGIVFIFKRKNSTRQKATSGFTGTNSKGLIVLSFSEIKTLTGDFKNQIGPKVFKGLLPNNLPIALKDLNATLEERKFRSAVMKMGCIHHKNLVKLEGYCCEFDHRFLVYEYCKKGSLDKYIDDPALCKMLTWRKRVEICSNVAKAICYLHSGCREFISHGNLKCENVMLDENLVAKVSEFGFAIADGKATYCGFSAEKDIEDFGKVVLALLTGCRDHEHVELCGWAYKEWMEERVVNVIDRRMEGGYNSEELERVLRIAFWCLQMDERRRPSMGEVVRVIDGTLSVDPPPPPFVFQRPLQVDDSEENVSEFEV* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0288 765 Gene3D Phosphorylase Kinase; domain 1 457 563 - -
Vra8g0288 765 SMART blect_4 36 157 IPR001480 -
Vra8g0288 765 Gene3D - 157 273 IPR036426 -
Vra8g0288 765 PANTHER OS07G0415500 PROTEIN 6 763 - -
Vra8g0288 765 Pfam D-mannose binding lectin 83 176 IPR001480 -
Vra8g0288 765 ProSiteProfiles Bulb-type lectin domain profile. 158 279 IPR001480 -
Vra8g0288 765 Pfam Protein tyrosine and serine/threonine kinase 504 638 IPR001245 GO:0004672|GO:0006468
Vra8g0288 765 SUPERFAMILY alpha-D-mannose-specific plant lectins 184 278 IPR036426 -
Vra8g0288 765 ProSiteProfiles Protein kinase domain profile. 468 746 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0288 765 CDD B_lectin 46 157 IPR001480 -
Vra8g0288 765 ProSiteProfiles PAN/Apple domain profile. 330 410 IPR003609 -
Vra8g0288 765 Gene3D - 27 156 IPR036426 -
Vra8g0288 765 Gene3D Hepatocyte Growth Factor 329 412 - -
Vra8g0288 765 PIRSF SRK 6 642 IPR024171 GO:0004674
Vra8g0288 765 PIRSF SRK 640 764 IPR024171 GO:0004674
Vra8g0288 765 ProSiteProfiles Bulb-type lectin domain profile. 30 155 IPR001480 -
Vra8g0288 765 Gene3D Transferase(Phosphotransferase) domain 1 564 738 - -
Vra8g0288 765 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 211 IPR036426 -
Vra8g0288 765 SMART ntp_6 331 409 IPR003609 -
Vra8g0288 765 Pfam S-locus glycoprotein domain 234 311 IPR000858 GO:0048544
Vra8g0288 765 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD3-1 6 763 - -
Vra8g0288 765 SUPERFAMILY Protein kinase-like (PK-like) 481 730 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0288 Vra-Chr8 3722584 3725691 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0288 448 761 Receptor kinase-like Gene Family AT4G21230 31.653 3.99e-42 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vra8g0288 PK_Tyr_Ser-Thr 2.3e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0288 - - vun:114192568 1397.1