Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0287 ATGAACCACTTGACCATTGAGACGGAGGATTCTTTTGCAAGCTTGCTTGAGCTTGCTGCTAACAATGATGTTGAAGGTTTTAAACGAATGATTGAGAGGGATCCTTCCTGTGTAGACGAGGTAGGACTATGGTACAGTCGGCAGAAGGGATCTAGGCGGATGGTCAATGAGCTCAGAACCCCATTGATGGTTGCTGCTACTTACGGGAGCATTGATGTTTTGGATCTGATTCTCTCACTTTCTGGTTATGATATTAATAAACCTTGTGGCCTTGACAAAAGCACTGCTCTTCACTGTGCCGCTTCAGGCGGTGCTGAAAATGCTGTTGATGTTGTTATATTGCTTTTAGCAGCCGGGGCTGATCCAAACTCTGTTGATGGAAATGGTCATCGTCCAGTTGATGTCATTGTTGTTCCTCCCAAGCATGAAACTATTAGAAACAGTCTTGAAGCACTTCTTCAAACTGATGACTCCATTGCAGTGTGTAACCTCAGGGTGATCACAGCCCCATCAAATGCATATTCTCCACCATTGTCAACTTCACCAGAGAATGGCTCTCCTTCTGCACCAGATTTCCAATTGAAGTCAAAGTTAAATGATGGCTTTGTTTCTTCTGCATCAGAGAAGAAAGAATATCCCGTTGATCCATCCCTTCCTGACATCAAAAATAGCATATATTCAACAGATGAATTCCGGATGTATTCTTTCAAAGTTCGACCTTGTTCACGTGCTTATTCACATGATTGGACAGAATGCCCTTTTGTTCATCCTGGGGAGAATGCTCGGAGAAGGGACCCAAGAAAGTACCACTACAGCTGTGTCCCTTGTCCTGATTTTCGGAAGGGTGCTTGCCGACGAGGAGATATGTGTGAATATGCTCATGGAGTTTTTGAGTGTTGGCTGCATCCAGCACAGTATCGTACTCGTCTTTGCAAAGATGGGACAAGTTGCTCCAGAAGAGTTTGCTTTTTTGCTCACACTGCTGAGGAGCTTCGGCCATTATATGTTTCAACTGGTTCTGCTGTACCATCTCCTCGTTCAAGCACATCTTCTGCTATGGAATTCGCGGCAGCTATGAACATGTTACCTGGCTCTCCTTCCTCAATGTCTGTCATGTCTCCTTCACCATTCACCCCACCCATGTCACCCTCTGCCAATGGCATGTCACACTCTTCCGTTGGCTGGCCCCAGCCAAATGTCCCTGCCTTGCATCTTCCAGGAAGCAATCTTCATTCCAGTCGATTGAGATCTTCATTCAATGCCAGAGATATTCCTATGGATGAGTTTGACATGTTGCCTGAGTACGATGCTCAGCAGCAGCAACAGCTACTTAACGAGTTCTCTTGCCTCTCTAAACAGCCTAATGCCATGAACCGCTCCGGCCGCATTAAAACACTGACCCCTTCAAATCTTGATGACCTATTTTCTTCTGAGAGTTCATCACCTCGGTTTGCTGATCCAGCATTGGCTTCGGCTGTTTTTTCTCCAACACATAAATCAGCTATTCTTAATCAATTTCAGCAGCAGCAAAGCTTGCTGTCGCCTGTGAACACAAATTTTTCTTCTAAAAATGTTGAGAATCCTTTATTGCAGGCTGCCTCATTTGGGGTTCAAACATCTGGTAGGATGTCTCCTAGGAATGTGGAACCTATTTCTCCAATGAGCTCTCGGATTTCTGTGCTAGCTCAACGTGAGAAGCAGCAACAATTCCGGAGTCTTAGCTCAAGGGAACTTGGCTCCAACTCTGCTACTGTTGCTGCAGCTGCTGCTGGGTCCCCAGTGAATTCTTGGTCAAAATGGGGACCCTCGAATGGTACATTGGATTGGGCTGTCAACGCTGATGAGTTAAGGAAACATCGTAGATCATCTTCGTTTGAGCATGGGAATAATAGCGAGGAGCCTGATTTCTCATGGGTGCAGTCACTTGTTAAAGAATCTCCAACTGAGATTAAGGAGAACTCAACTGCAACTGTCTCAAGTGGTGCAGCAGCTGGATCCTCCAGTGAGGTATCAAATATGAGCACACAAATGGACTCTGTTGATCATGCTGTGTTAGGAGCATGGCTTGAACAAATGCAGCTCGATCTTGTGGCTCAGCAAAACTAA 2106 0.4554 MNHLTIETEDSFASLLELAANNDVEGFKRMIERDPSCVDEVGLWYSRQKGSRRMVNELRTPLMVAATYGSIDVLDLILSLSGYDINKPCGLDKSTALHCAASGGAENAVDVVILLLAAGADPNSVDGNGHRPVDVIVVPPKHETIRNSLEALLQTDDSIAVCNLRVITAPSNAYSPPLSTSPENGSPSAPDFQLKSKLNDGFVSSASEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSSAMEFAAAMNMLPGSPSSMSVMSPSPFTPPMSPSANGMSHSSVGWPQPNVPALHLPGSNLHSSRLRSSFNARDIPMDEFDMLPEYDAQQQQQLLNEFSCLSKQPNAMNRSGRIKTLTPSNLDDLFSSESSSPRFADPALASAVFSPTHKSAILNQFQQQQSLLSPVNTNFSSKNVENPLLQAASFGVQTSGRMSPRNVEPISPMSSRISVLAQREKQQQFRSLSSRELGSNSATVAAAAAGSPVNSWSKWGPSNGTLDWAVNADELRKHRRSSSFEHGNNSEEPDFSWVQSLVKESPTEIKENSTATVSSGAAAGSSSEVSNMSTQMDSVDHAVLGAWLEQMQLDLVAQQN* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0287 701 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 275 295 IPR000571 GO:0046872
Vra8g0287 701 MobiDBLite consensus disorder prediction 173 192 - -
Vra8g0287 701 SMART ANK_2a 92 124 IPR002110 GO:0005515
Vra8g0287 701 SMART ANK_2a 10 39 IPR002110 GO:0005515
Vra8g0287 701 SMART ANK_2a 57 87 IPR002110 GO:0005515
Vra8g0287 701 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Vra8g0287 701 PANTHER UNKEMPT FAMILY MEMBER 1 697 IPR045234 -
Vra8g0287 701 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 1 697 - -
Vra8g0287 701 SMART c3hfinal6 270 296 IPR000571 GO:0046872
Vra8g0287 701 SMART c3hfinal6 305 328 IPR000571 GO:0046872
Vra8g0287 701 ProSiteProfiles Zinc finger C3H1-type profile. 275 297 IPR000571 GO:0046872
Vra8g0287 701 MobiDBLite consensus disorder prediction 647 674 - -
Vra8g0287 701 Pfam Ankyrin repeats (3 copies) 49 126 IPR002110 GO:0005515
Vra8g0287 701 Gene3D - 272 333 - -
Vra8g0287 701 SUPERFAMILY Ankyrin repeat 12 139 IPR036770 -
Vra8g0287 701 Gene3D - 8 159 IPR036770 -
Vra8g0287 701 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0287 Vra-Chr8 3686012 3690055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0287 7 695 C2H2 Transcription Factor Family AT5G12850 54.261 0.0 705
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vra8g0287 Ank_2 3.6e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0287 - - gmx:100813554 1226.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0287 8 3686012 3690055 Vra8g0287 8 3686012 3690055 ECH