Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0284 ATGGCCGAATCACTTCTTTTCAGCTTCGCAGAATCGCTTCTGCGGAAGCTTGCTACTGTTGCCATTCAAGAAGCTGCTCTGGCGCTTGGTGTGCGAAGCGAGCTACATCAGATGAAAGAAACTATGTCACTCATCAGAGGTGTGCTCTTATATGCTCAGCAAAAGACTCCACAGAGCATGGCGTTGAGCGAATGGTTGAGACGGGTTAAACGCGTGTTTTCTGATGCTGAAGACATAGTCGATGACTTTGAATGCGAAGCGCTTCGGAAGCACGTTGTCAACACTTACGGTAGTCTCTCGATGAAGGTACGCCGTTTCTTCTCATCAAGTAATTCTGTTGTTTATCGTCTTAGAATGGCGCATCGCATTCAAGACATCAATACCAGGTTGGCCAAACTTGCAGCTGATAGGAACATGTTTGGCCTTCAAATCATTGACCACGATACACGTGTTGTCCATGTGAGGGACATGACTCATTCTTATGTAAAACCTTCGAATGTTACAGGAAGGGAACATGATAAGAATGAAATACTAAACCTTCTTATGCAAGATGGTGATCGTCCAAGTCTTTCTGTTATTTCCATTGTTGGAATGGGAGGCTTGGGAAAAACCACCCTTGCTAAGTTGGTCTTCAATGACACAAACATTGATGCATGTTTTCCGTTGAAGATGTGGGTATGTGTCTCTAATGATTTTGAACTTAGAAATGTGCTCGTCAAAATTCTTAATTCTATTCCAAACCCAACTAGAGAAAACTTCAATAACCTTGAGATAGAACACCTTCAAAATCATTTGAGAAATACACTTAAAGGTAAGAAGTTCTTGCTTGTGTTAGATGACGTGTGGAACGAGGATCCTGCAAGATGGCATGAGTTAAAGGAAATAATAGATTCGGATGTTGAAGGTAGTAAAGTCGTAGTGACTACTCGTAGCCATGCAGTAGCTACCATGATGCAAACTAAATCCTCAAATCCATACCTTCTTGAATGTCTTTCTGAAGAAGATTCTCTTTCTCTATTTGTGAAATATGCGTTTGTAGATGGAGAGGAGAAAAACCATCCAGAACTACTGGAGATTGGGAAAGAGATCGTAGAAAAATGTGGACGGTTACCGTTGGCACTGAAAACGGTGGGGAGTTCGTTGTTCTCGAAGGTTGTTAAGGAAGATTGGGAGTCTATAAGAGACAATGAGATTTGGAATTTAGAACAAAATGAAAAAGGAATTTTGCCTCCTCTCAAACTAAGTTATGATCAACTGCCTTCATATTTAAAACCATGTTTTGCTTCTTTATTCCTTTATGAATACGACATTAATGTTTTATGTTATGATCTTTCCATGTTGTTGGATTCACTTGGTTTTCTTCCACCACCAAAGGAAGGTGAATCAATGAGTGATGTTGCTAATCAAGTTTTGCGTGAACTAAGGACAAGATCGTTTCTTTCCGATGATCTTGACTTTGGGGTTGATTCTTGTTTTGAAATGCATGATTTGGTAAGCGATCTTGCAGTGTATATTGGGAAAGGTGAATTTGAAAGAGTAAATCGTCGCAATCCAAAAATATCGGAGAACGCCCAACATTTAGTATTTGAGGAAAATGACTTTTGTGGTGAAGATCTTGTCCCCACTGGTGTCAGATCTGTTGTTTTTCGTAACGGAGGGAATGATATAAATTTCTTGAATACATTGGTGTCAAGGTGCAAATACTTGAGGCTTTTAGACTTACGTTATTCAGAATATGAGAATCTGCCTCAGTGTATCGGAAAGTTGAAACATTTAAGATTTCTCTGCCTTGCAAAAAATGAAAAACTTAAGGAACTCCCTGATTCAGTCTGCAAACTTCAAAATTTGCAAACTTTAATCCTTAGTGGATGCACAAATCTACAAAAGTTACCCAAAGGAATGAAAAATCTTGTTAGCCTTCGTCATTTGGCTATAACCACTGCACAAACTGATTTTCCAGAAGAATTGATTGCAAATTTGACTTCTTTAGAAAATTTATCTTTTACTGAATGTGATAATTTGGAATCATTGTTCGAAGGAGTACAACTTTCAACGGTTAAGAGTTTGATTTTGTCTGAGTGTGGAAGTCTAAAGTCGGTGTCGCTCCATGCCTTCAGAAATTTAGAGGTTTTAATGATTGCCGATTGCATCAAGCTGGAATTGTCAATGAGCCTTAGCTACCAAATCCCAGATTCAAAGTTAAAGTATCTTTTTCTTGATGACTTGCCACAACTGGTTAAATTGCCTCAGTCGTTTCAAGGATCTGCAGACAGTTTACAACACTTAGCAATTTCAGATTGCGTCAATCTTGATGAACTTCCTGAATGGCTACCAACTCTAAGTTGTCTCAAAGTACTTGACATTTGCAGTTGTCCTAATCTACTGTCACTCCCTGATAATATTCATCACCTCACAAATCTTGAAAATCTAGAAATCGTTGATTGTCCTGAATTATGCAGAAGATTCAAACCAAAAGTTGGACAAGATTGGCACAAGATATCACATATCAAACAAGTTCACATTGAAGATTCAGATAATGAAGAAGAATTATCCGAATAA 2559 0.3857 MAESLLFSFAESLLRKLATVAIQEAALALGVRSELHQMKETMSLIRGVLLYAQQKTPQSMALSEWLRRVKRVFSDAEDIVDDFECEALRKHVVNTYGSLSMKVRRFFSSSNSVVYRLRMAHRIQDINTRLAKLAADRNMFGLQIIDHDTRVVHVRDMTHSYVKPSNVTGREHDKNEILNLLMQDGDRPSLSVISIVGMGGLGKTTLAKLVFNDTNIDACFPLKMWVCVSNDFELRNVLVKILNSIPNPTRENFNNLEIEHLQNHLRNTLKGKKFLLVLDDVWNEDPARWHELKEIIDSDVEGSKVVVTTRSHAVATMMQTKSSNPYLLECLSEEDSLSLFVKYAFVDGEEKNHPELLEIGKEIVEKCGRLPLALKTVGSSLFSKVVKEDWESIRDNEIWNLEQNEKGILPPLKLSYDQLPSYLKPCFASLFLYEYDINVLCYDLSMLLDSLGFLPPPKEGESMSDVANQVLRELRTRSFLSDDLDFGVDSCFEMHDLVSDLAVYIGKGEFERVNRRNPKISENAQHLVFEENDFCGEDLVPTGVRSVVFRNGGNDINFLNTLVSRCKYLRLLDLRYSEYENLPQCIGKLKHLRFLCLAKNEKLKELPDSVCKLQNLQTLILSGCTNLQKLPKGMKNLVSLRHLAITTAQTDFPEELIANLTSLENLSFTECDNLESLFEGVQLSTVKSLILSECGSLKSVSLHAFRNLEVLMIADCIKLELSMSLSYQIPDSKLKYLFLDDLPQLVKLPQSFQGSADSLQHLAISDCVNLDELPEWLPTLSCLKVLDICSCPNLLSLPDNIHHLTNLENLEIVDCPELCRRFKPKVGQDWHKISHIKQVHIEDSDNEEELSE* 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0284 852 SUPERFAMILY L domain-like 494 837 - -
Vra8g0284 852 CDD RX-CC_like 8 134 IPR038005 -
Vra8g0284 852 Gene3D - 416 503 IPR036388 -
Vra8g0284 852 PRINTS Disease resistance protein signature 192 207 - -
Vra8g0284 852 PRINTS Disease resistance protein signature 268 282 - -
Vra8g0284 852 PRINTS Disease resistance protein signature 367 381 - -
Vra8g0284 852 PRINTS Disease resistance protein signature 611 627 - -
Vra8g0284 852 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 428 IPR027417 -
Vra8g0284 852 PANTHER DISEASE RESISTANCE PROTEIN RP 27 820 IPR044974 GO:0006952
Vra8g0284 852 Gene3D - 150 324 IPR027417 -
Vra8g0284 852 Gene3D - 10 124 - -
Vra8g0284 852 Pfam Rx N-terminal domain 10 100 IPR041118 -
Vra8g0284 852 Pfam NB-ARC domain 170 396 IPR002182 GO:0043531
Vra8g0284 852 PANTHER OS08G0543100 PROTEIN 27 820 - -
Vra8g0284 852 Gene3D - 330 415 IPR042197 -
Vra8g0284 852 Gene3D Ribonuclease Inhibitor 542 852 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0284 Vra-Chr8 3654094 3656861 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0284 193 804 WRKY Transcription Factor Family AT5G45050 24.660 4.24e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0284 - - vra:106771654 1131.7