Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0280 ATGGCCGAATCACTTCTTTTCAGCTTCGCAGAATCGCTCATAGGAAAGCTTGCCACTGCTGCCGTCCAAGAAGCTTCTTTGGCGTTTGGTGTACATAGCCAGCTACAGCAAATGAAAGCAACTATGGATCTCATCAAAGGTGTTCTGTTAGATGCTGAGCTGAAGAATCTGCAGAGCAGTGCGCTGAGCAGATGGCTAAGACAGGTTAAGCGGGTGTTTTCTGATGCTGAAGACATAGTCGATGATTTTGAGTGTGAAGCCTTGCGGAAATATGTTGTCAACACATATGGAAGCTGCTCAAGAAAGGTACGCCGTTTTTTCTCATCAAGTAATCCTGTTGTTTATCGTCTTAGAATGACACATCACATTCAAGACATCAACACCAGGTTGGCCAAACTTGCAGTTGATAGGAACATGTTTGGCCTTCAAATCATTGACCATGATACACGTGTTGTTCACGTGAGGGAAATGACTCATTCTCATGTAAATCCTTCCAATGTTAAAGGAAGGGAACATGATAAGAATGAAATAGTAAAACTTTTGGTGCAAGATGGTGATTATCAAAGTCTTTCTGTTATTTCCATTGCGGGAATGGGAGGCTTGGGAAAAACCACACTTGCTAAGTTGGTCTTCAATGACAAGAACATTGATGAATGTTTTCAGTTGAAGATGTGGGTATGTGTTTCTAATGATTTTGAACTTAGGAATGTGCTCATTAAAATCCTGAATTCTGCTCCAAATCTGACTCAAGAAAACTTCAATAACTTTGAGACGGAACAACTTCAAATTCGTTTGAGAAGTACACTTGAAGGTAAGAAGTTCTTGCTTGTGTTAGATGACGTGTGGAACGAGGATCCTACACGATGGCATGAGTTGAAGGAAATAATAGATGTGGATGTTGAAGGGAGTAAAGTCCTAGTGACCACTCGTAGCCATGCAGCAACTGCCATAATGCGCACTAAACCATCAAATCTGTACCTTCTTCAATGTCTCTCTGAAGAGGATTCTCTTTCTCTATTTGTGAAATATGCTTTTGATGATGGAGAAGAAAAAAAGCATCCAGAACTATTGGAGATTGGAAAAGAAATAGTGGAAAAATGTGGTGGGTTACCTTTAGTAGTGAAAACTGTTGGGAGTTCATTGTTCTCAAGGTTTGACAAGAAAGAGTGGGAGTCTATAAGAGACATGAGATTTGGAATTTAA 1203 0.4023 MAESLLFSFAESLIGKLATAAVQEASLAFGVHSQLQQMKATMDLIKGVLLDAELKNLQSSALSRWLRQVKRVFSDAEDIVDDFECEALRKYVVNTYGSCSRKVRRFFSSSNPVVYRLRMTHHIQDINTRLAKLAVDRNMFGLQIIDHDTRVVHVREMTHSHVNPSNVKGREHDKNEIVKLLVQDGDYQSLSVISIAGMGGLGKTTLAKLVFNDKNIDECFQLKMWVCVSNDFELRNVLIKILNSAPNLTQENFNNFETEQLQIRLRSTLEGKKFLLVLDDVWNEDPTRWHELKEIIDVDVEGSKVLVTTRSHAATAIMRTKPSNLYLLQCLSEEDSLSLFVKYAFDDGEEKKHPELLEIGKEIVEKCGGLPLVVKTVGSSLFSRFDKKEWESIRDMRFGI* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0280 400 Gene3D - 149 323 IPR027417 -
Vra8g0280 400 Gene3D - 330 397 IPR042197 -
Vra8g0280 400 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 395 IPR027417 -
Vra8g0280 400 CDD RX-CC_like 8 134 IPR038005 -
Vra8g0280 400 Pfam Rx N-terminal domain 10 91 IPR041118 -
Vra8g0280 400 Pfam NB-ARC domain 170 394 IPR002182 GO:0043531
Vra8g0280 400 PANTHER DISEASE RESISTANCE PROTEIN RP 29 391 IPR044974 GO:0006952
Vra8g0280 400 Gene3D - 10 124 - -
Vra8g0280 400 PANTHER OS08G0543100 PROTEIN 29 391 - -
Vra8g0280 400 PRINTS Disease resistance protein signature 192 207 - -
Vra8g0280 400 PRINTS Disease resistance protein signature 268 282 - -
Vra8g0280 400 PRINTS Disease resistance protein signature 367 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0280 Vra-Chr8 3603972 3605180 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0280 190 391 WRKY Transcription Factor Family AT5G45050 26.168 4.40e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0280 - - vra:106770081 632.869