Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0274 ATGGCCACTTCTCCAAACGTGACAACATTTAACACCAAACTTCACTCTTGCTCCTACATATCCCGCTCCATTCCTCCCTCATCATGCATCAATTCCAAGTGTATCATCATCATCATCCTTCCTCAATTCCCATCACTATCAGCCATGGATGGTTGCAAAAACTCCCCTCTAAAACCATGGAAGAAAGGCCCAACTAGGGGCAAAGGTGGCCCCCAAAATGCCTCCTGTGAGTATAGAGGTGTCAGACAAAGAACATGGGGCAAATGGGTCGCTGAGATAAGAGAGCCTAAGAAGAGATCAAGACTCTGGCTTGGCTCCTTTGCCACAGCAGAAGAAGCTGCTTTCGCCTATGATCAAGCTGCAAGGAGACTCTATGGTCCTGATGCTTACCTCAACCTCCCCCACATGCAACCAAACCTCATCAACTCCACCACCAAATCTCAAAACTTCAAGTGGTTCCCTTCCAACAACTTCATCTCCATGTTCCCCTCACGTGGACTTCTCAACCTCAATGCTCAACCAAGTCTCCATCTCATCCACCAGAGGCTGCAACAGCTCAAGCACAACGGGCTGTCTGCACCAACTCAACCACCACATTCAAAGGTGGTAGAACTTGACAACTTGGTCAACCAAAACCATCCAGAGATTCTCCCTCCACAGCCCCAAGATTCTCAAGCTTCACCACAAAAACTAACAGCTGATTTTGAGGAGAAACCCGAGATAGACCTGCTTGAGTTTCTTCAACAGATGGGAATACTAAAAGATGAAAGAGAGGCAGAGAAAACTGACAGCTCAGGAAGTTCAGCAGTGTCAGAAGCTGCATCACGAGATGAGAATGAACAACCAGGAGTGTTTTCTGACATGAGTAGTGTTAACTGGGAGGAACTGATTGAGATGCATGACCATGAAGTTGTGTGTAACTATCTTGCATCTGAAGAAATTCAGTTTGAAGCATATGACACAAACGAGGACCTTACTTTCTCCACTTCCATTTGGAACTACTAA 1005 0.4617 MATSPNVTTFNTKLHSCSYISRSIPPSSCINSKCIIIIILPQFPSLSAMDGCKNSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRSRLWLGSFATAEEAAFAYDQAARRLYGPDAYLNLPHMQPNLINSTTKSQNFKWFPSNNFISMFPSRGLLNLNAQPSLHLIHQRLQQLKHNGLSAPTQPPHSKVVELDNLVNQNHPEILPPQPQDSQASPQKLTADFEEKPEIDLLEFLQQMGILKDEREAEKTDSSGSSAVSEAASRDENEQPGVFSDMSSVNWEELIEMHDHEVVCNYLASEEIQFEAYDTNEDLTFSTSIWNY* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0274 334 Pfam AP2 domain 76 126 IPR001471 GO:0003700|GO:0006355
Vra8g0274 334 MobiDBLite consensus disorder prediction 257 285 - -
Vra8g0274 334 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2F 49 331 - -
Vra8g0274 334 SMART rav1_2 77 140 IPR001471 GO:0003700|GO:0006355
Vra8g0274 334 MobiDBLite consensus disorder prediction 212 231 - -
Vra8g0274 334 CDD AP2 76 135 IPR001471 GO:0003700|GO:0006355
Vra8g0274 334 MobiDBLite consensus disorder prediction 213 231 - -
Vra8g0274 334 Gene3D AP2/ERF domain 77 135 IPR036955 GO:0003700|GO:0006355
Vra8g0274 334 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Vra8g0274 334 PRINTS Ethylene responsive element binding protein signature 100 116 IPR001471 GO:0003700|GO:0006355
Vra8g0274 334 ProSiteProfiles AP2/ERF domain profile. 77 134 IPR001471 GO:0003700|GO:0006355
Vra8g0274 334 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 49 331 - -
Vra8g0274 334 SUPERFAMILY DNA-binding domain 77 135 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0274 Vra-Chr8 3545858 3547553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0274 53 334 AP2-EREBP Transcription Factor Family AT3G57600 52.632 3.37e-88 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vra8g0274 AP2 7.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0274 - - gmx:100808719 422.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0245 3 2787591 2789280 Vra8g0274 8 3545858 3547553 PCT