Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vra8g0270 | ATGTATCTGTATATAAAAGCAAACCTACATAGCCTTCTACTGTTCCCACTCTCTCCTCAAACACAAACCTTTTTCCATTCCACCATGGCAGACCCTTACTCCAATTTCTTCTCACCACCTTTCTTCCACTACCCCTCTCCAAACCCTTCCTCTCACCACCATCATCCATATCCTCACAACTTCATCAACCAAACCACCACCACCAACATCACCCACAACACCTTTTTCCACTTCCAACATCACCACCACCACTTTCAAACCACTACCACCACCTCCTTTTCTTCTTCTTCACCCCCTTCTCCTCCCTTGAGAGAGGCCCTTCCTCTTCTCACCCTCAGCCCAAAAAATTATGACCAACCTCAGGAGGACTACCAGGATCAGGATCAGGATCAGCTTTCAACTGCCATGGATGTCGAAGACAACTTTAACAGGACCCTCCATAGCCCCAAAGAAGAGGACCAAGAAGATGATGCTCATCACAGTGTCACTGTTGCACTGCACATAGGGTTGCCAAGCCCTAGCGCTGCTGAGATTGCTTCTGTGCTGTCTTCTGCTTGTGCCACAGACAAAGACCGACAACAAGGAGGAGGAGGAGGAGATTGTGATAATAATGGGATTGATGATTCTTCTTCAGGGTTCTTGTCCAACAGGCTCAACAAGGGACAGTACTGGATCCCTACCCCTTCTCAGATTCTCATTGGACCTACACAGTTCTCTTGTCCTGTTTGTTTCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCTGAATCTCTGAGGGGTACCCAACCAACAGGTATGCTTAGGCTTCCATGCTATTGTTGTTCCCCAGGATGCAGAAACAACATTGATCACCCAAGAGCAAAGCCCCTTAAAGATTTCAGAACTCTTCAAACACACTACAAGAGGAAGCATGGGATTAAGCCCTTCATGTGTAGAAAATGTGGTAAGGCTTTTGCAGTGAGAGGCGATTGGAGAACCCATGAAAAGAACTGTGGGAAGCTTTGGTACTGCATCTGTGGCTCTGATTTCAAACACAAGAGGTCTCTTAAAGATCACATCAAAGCTTTTGGAAGTGGCCATGCAGCTTATGGGATCGATGGCTTTGAAGAGGAAGAAGAGCCTGCATCTGAAGTAGAACAAGACAATGACTAA | 1191 | 0.4643 | MYLYIKANLHSLLLFPLSPQTQTFFHSTMADPYSNFFSPPFFHYPSPNPSSHHHHPYPHNFINQTTTTNITHNTFFHFQHHHHHFQTTTTTSFSSSSPPSPPLREALPLLTLSPKNYDQPQEDYQDQDQDQLSTAMDVEDNFNRTLHSPKEEDQEDDAHHSVTVALHIGLPSPSAAEIASVLSSACATDKDRQQGGGGGDCDNNGIDDSSSGFLSNRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEEEPASEVEQDND* | 397 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vra8g0270 | 396 | SMART | c2h2final6 | 238 | 260 | IPR013087 | - | |
Vra8g0270 | 396 | SMART | c2h2final6 | 322 | 342 | IPR013087 | - | |
Vra8g0270 | 396 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 322 | 342 | IPR013087 | - | |
Vra8g0270 | 396 | Gene3D | Classic Zinc Finger | 300 | 375 | - | - | |
Vra8g0270 | 396 | SUPERFAMILY | beta-beta-alpha zinc fingers | 304 | 342 | IPR036236 | - | |
Vra8g0270 | 396 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 240 | 260 | IPR013087 | - | |
Vra8g0270 | 396 | MobiDBLite | consensus disorder prediction | 87 | 106 | - | - | |
Vra8g0270 | 396 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 238 | 265 | IPR013087 | - | |
Vra8g0270 | 396 | PANTHER | ZINC FINGER PROTEIN WIP2 | 77 | 396 | IPR043584 | GO:0003700|GO:0010468 | |
Vra8g0270 | 396 | MobiDBLite | consensus disorder prediction | 189 | 208 | - | - | |
Vra8g0270 | 396 | Gene3D | Classic Zinc Finger | 237 | 260 | - | - | |
Vra8g0270 | 396 | PANTHER | ZINC FINGER PROTEIN WIP2-LIKE | 77 | 396 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vra8g0270 | Vra-Chr8 | 3466139 | 3469889 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vra8g0270 | 29 | 396 | C2H2 Transcription Factor Family | AT3G57670 | 61.869 | 2.65e-147 | 421 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Vra8g0270 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vra8g0270 | - | - | vra:106771283 | 671.389 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vra8g0270 | 8 | 3466139 | 3469889 | Vra8g0270 | 8 | 3466139 | 3469889 | ECH | |
Vra8g0270 | 8 | 3466139 | 3469889 | Vra4g0188 | 4 | 4655793 | 4658025 | ECH | |
Vra8g0270 | 8 | 3466139 | 3469889 | Vra2g0536 | 2 | 4240345 | 4243043 | ECH | |
Vra3g0239 | 3 | 2724405 | 2727154 | Vra8g0270 | 8 | 3466139 | 3469889 | PCT |