Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0270 ATGTATCTGTATATAAAAGCAAACCTACATAGCCTTCTACTGTTCCCACTCTCTCCTCAAACACAAACCTTTTTCCATTCCACCATGGCAGACCCTTACTCCAATTTCTTCTCACCACCTTTCTTCCACTACCCCTCTCCAAACCCTTCCTCTCACCACCATCATCCATATCCTCACAACTTCATCAACCAAACCACCACCACCAACATCACCCACAACACCTTTTTCCACTTCCAACATCACCACCACCACTTTCAAACCACTACCACCACCTCCTTTTCTTCTTCTTCACCCCCTTCTCCTCCCTTGAGAGAGGCCCTTCCTCTTCTCACCCTCAGCCCAAAAAATTATGACCAACCTCAGGAGGACTACCAGGATCAGGATCAGGATCAGCTTTCAACTGCCATGGATGTCGAAGACAACTTTAACAGGACCCTCCATAGCCCCAAAGAAGAGGACCAAGAAGATGATGCTCATCACAGTGTCACTGTTGCACTGCACATAGGGTTGCCAAGCCCTAGCGCTGCTGAGATTGCTTCTGTGCTGTCTTCTGCTTGTGCCACAGACAAAGACCGACAACAAGGAGGAGGAGGAGGAGATTGTGATAATAATGGGATTGATGATTCTTCTTCAGGGTTCTTGTCCAACAGGCTCAACAAGGGACAGTACTGGATCCCTACCCCTTCTCAGATTCTCATTGGACCTACACAGTTCTCTTGTCCTGTTTGTTTCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCTGAATCTCTGAGGGGTACCCAACCAACAGGTATGCTTAGGCTTCCATGCTATTGTTGTTCCCCAGGATGCAGAAACAACATTGATCACCCAAGAGCAAAGCCCCTTAAAGATTTCAGAACTCTTCAAACACACTACAAGAGGAAGCATGGGATTAAGCCCTTCATGTGTAGAAAATGTGGTAAGGCTTTTGCAGTGAGAGGCGATTGGAGAACCCATGAAAAGAACTGTGGGAAGCTTTGGTACTGCATCTGTGGCTCTGATTTCAAACACAAGAGGTCTCTTAAAGATCACATCAAAGCTTTTGGAAGTGGCCATGCAGCTTATGGGATCGATGGCTTTGAAGAGGAAGAAGAGCCTGCATCTGAAGTAGAACAAGACAATGACTAA 1191 0.4643 MYLYIKANLHSLLLFPLSPQTQTFFHSTMADPYSNFFSPPFFHYPSPNPSSHHHHPYPHNFINQTTTTNITHNTFFHFQHHHHHFQTTTTTSFSSSSPPSPPLREALPLLTLSPKNYDQPQEDYQDQDQDQLSTAMDVEDNFNRTLHSPKEEDQEDDAHHSVTVALHIGLPSPSAAEIASVLSSACATDKDRQQGGGGGDCDNNGIDDSSSGFLSNRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEEEPASEVEQDND* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0270 396 SMART c2h2final6 238 260 IPR013087 -
Vra8g0270 396 SMART c2h2final6 322 342 IPR013087 -
Vra8g0270 396 ProSiteProfiles Zinc finger C2H2 type domain profile. 322 342 IPR013087 -
Vra8g0270 396 Gene3D Classic Zinc Finger 300 375 - -
Vra8g0270 396 SUPERFAMILY beta-beta-alpha zinc fingers 304 342 IPR036236 -
Vra8g0270 396 ProSitePatterns Zinc finger C2H2 type domain signature. 240 260 IPR013087 -
Vra8g0270 396 MobiDBLite consensus disorder prediction 87 106 - -
Vra8g0270 396 ProSiteProfiles Zinc finger C2H2 type domain profile. 238 265 IPR013087 -
Vra8g0270 396 PANTHER ZINC FINGER PROTEIN WIP2 77 396 IPR043584 GO:0003700|GO:0010468
Vra8g0270 396 MobiDBLite consensus disorder prediction 189 208 - -
Vra8g0270 396 Gene3D Classic Zinc Finger 237 260 - -
Vra8g0270 396 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 77 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0270 Vra-Chr8 3466139 3469889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0270 29 396 C2H2 Transcription Factor Family AT3G57670 61.869 2.65e-147 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra8g0270 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0270 - - vra:106771283 671.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0270 8 3466139 3469889 Vra8g0270 8 3466139 3469889 ECH
Vra8g0270 8 3466139 3469889 Vra4g0188 4 4655793 4658025 ECH
Vra8g0270 8 3466139 3469889 Vra2g0536 2 4240345 4243043 ECH
Vra3g0239 3 2724405 2727154 Vra8g0270 8 3466139 3469889 PCT