Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0268 ATGTCTCGTCTGCAGCATTTTTACTTGACTTTGTTGTCCTTCAACTCTCTCTTCTCTCTCTCTGAACTCTGTTTTGCTGTAGGTTTCTGTCCGTTTATAGCATTTGGAAGAAGCAAAAGGCTTCTTTTGGAGGTTTCCATGGAGAGTACTGGCAAGATGGAAGACTATGAAGTGATTCAGCAAATTGGAAGAGGGGCACTTGGTGCAACTTTTCTTGTTCTCCACAAGATTGAGAAAAAGAGGTATGTGCTGAAGAAAATTCGCTTGTCCAAACAAGCTGACAAATCCAAAGTGACAGCACAACAAGAGATGGACCTGATAGCTAAACTAAATTACCCTTATATTGTGGAGTACAAAGATGCTTGGGTGGAGAAGGAGGATTGCATATGCATTATAACCGGCTATTGCGAAGGGGGTGACATGGCTGCAAATATAAAGAAAGCTCGGGGATCTTATTTTTCAGAGGAGAAAGTCTGCAAATGGTTGACTCAATTGCTACTAGCTGTGGACTACCTTCACTCCAATCGGGTACTCCACAGAGATCTTAAGTGTTCCAACATATTCCTTACCAAAGAAAATAACATTCGGCTAGGTGAATTTGGTCTTGCGAAGCTTCTCAATCCTCAAGACCTCACTTCTCCGGCTTTTGGAACTCTAAACTACATGTGTCCCGAGGCCTTTGCTGGTATACCTTATGGTTATAAATCTGATATGTGGTCACTTGGTTGCTGCATGTTTGAAATTGTTGCACATCAACTAGCATTTCGTGCTCCAGACAGGGCTGGACTTATCAATAAAATAAATAGATGCTCCATTTCTCCGTTGCCAATTGTTTACTCGTCCACACTGAAACAACTTATCAAGAGCATGCTGAGGAAAAACCCAGAACACAGACCAACAGCATCTGAATTATTAAGGCATCCTCATTTACAACCTTATGTTCTACGCTGTCGTAATGCTTCATCTATTTATTTACCAGTACATCTTATAAATAGTAACTCTCCAAAGGATAAAACTAAAAACAAATCTAGTGGTAGCAAAGACCATTGGGATAAGGAAGCAGAATTAGCAGGATTAGTAAATCGGTTGGACCGAATTTATCCATTGGAGGGAAATGGAGATGTACAGACACGGAACCAGCATAATGAGGACAAGCTAGCAATGCCAACCAAAGTCAAGGTTGAGACCAAAATGGTTGATTCTACCAGCTATACACAGGAATTCTCTACAAGTATTAGTGGCTCAAAAGATGGCTCTACAACATCTGAATCAACTGTTTGCAGTGTGAGCAAGGAAGGAGACTTTAAAAATAGATTTGCAAGGGACACAGCTGACAGTGAGATCACTTCAAAAAGTACAATAGATTGTGTGCATGAAGAGCAAGGACTTACTACCCATAAGTCATACGCATTTGACATAAATACAGCAATTAAAAATGTTGAAGATATTCTTTCCAATGAAGATCTCAATACAGATGAAGCACTCAGCGAAGGTGCCAAAACTGGGGATTACAGTAAATCAACAATGTCCAGTGAAGGCAGCGAGGGTAATGATAAAGATGAGTCCATTGATGAGATCATGTCAAAGAGTACCCTTGATTCTGTGCATGAAGAACAAGGATTTACGGTGGACGGTTTTCGGAAGTCGGATGTGGTTGACCCAAGCACAGTATCTACAGAAGTTGAAGATAATTTTTCCAGTGATGGTTTTGATAAAATGGAAACAGAGAGGGAAAATGACAAACTTGTGGACTCCAAAAAATCAATAGTGTTCACTGAAAACAGCAAAGGCAATGATAAAGATGTTTCCATTGATGAGATCACTTCAAAGAGTATTCTAGAATCTGTGCATGATGAACAAGAATTTACTGCTGAACATTTTCCAAAGTCAGATGTGATCGACACGAATGCAGTGGCTACAAAATTTGAAGATAATTTTTGCAATGAAGCATTTGATGAAACTGGAACAGAGACAAAAAATGGCAGACAGGACTCCAGAATATTAGGGTACATTGATGACAGCAGATTGAAGAGTACACTCGATTCTATGCATGAAGAGAAATGGTTTATAGCTGAACCTGCTCAAAAGTTAGATCTTGTTGACATAAAAGCCACAGCTTCAAAAGATGTGGACAGAGTTTCTAATGAAGGTTCTGGTGAAGCTGAAGCACAGAGTGAAGATGCCAAACTTGAGTGCTCCAGTAAATCAATAATTTCCTATGATAACAGCAACGGTAATGATGAAGATGGATCTGGTGATGAGATCACATCGAAGAGTATGCTAGAATCTGTAGGTGAAGAACAAGGACTCACTGCTGAGCATTTCCAGACGTCTGATGCAATAGACATAACTATAGTGACTACAGAATTTGAAGATAAACTTTCCAATGAAGGTTTTGATAAAGCTGAAACACAGGAGAAAGATGCTAAACCTGAGGACTCCCTTAAATCTTTGTCCAGTGAAGGCAGCAGCAGCAGTGATAAAGACGGGTCCATTGATGAGGAAAGGTCATCATCCCCACTGGCACAACCTGTTAGGGTTGAACATGACACTGAAACTGGAAGCAGCTTGAAGGAAGATGAAAAACCTGAAGGATTTAAAGAGGGCTCACACATGAACAGCTTGACTTCTGATACTAAGGATACGCATCCAGGTAAGGATGAAAACAGAGAAGACACACACACAATCAGTTGCTCAACGTGTAAAGAAGACAGCAATGCTGTTGGGACCCAGAAGCAAGCAAATGACATTTCATTAATGAAGCGTATTTCAAGAGGCAGTAATGCTTCTTGCCAGCAAAGAGCCGATGCTTTGGAATCTCTACTTGAGTTATGTGCACAGCTACTTCAGCAAGGAAACCTTGAAGAGCTTGCTGCTGTGCTAAGACCATTTGGAGAAGATGCTGTATCTGTGTCTTCCAGAGAAACAGCGATATTGCTAACAAAAAGCCTCATGGCGTCCCAAAAACTTAATCCTGAAACGTAG 2985 0.4057 MSRLQHFYLTLLSFNSLFSLSELCFAVGFCPFIAFGRSKRLLLEVSMESTGKMEDYEVIQQIGRGALGATFLVLHKIEKKRYVLKKIRLSKQADKSKVTAQQEMDLIAKLNYPYIVEYKDAWVEKEDCICIITGYCEGGDMAANIKKARGSYFSEEKVCKWLTQLLLAVDYLHSNRVLHRDLKCSNIFLTKENNIRLGEFGLAKLLNPQDLTSPAFGTLNYMCPEAFAGIPYGYKSDMWSLGCCMFEIVAHQLAFRAPDRAGLINKINRCSISPLPIVYSSTLKQLIKSMLRKNPEHRPTASELLRHPHLQPYVLRCRNASSIYLPVHLINSNSPKDKTKNKSSGSKDHWDKEAELAGLVNRLDRIYPLEGNGDVQTRNQHNEDKLAMPTKVKVETKMVDSTSYTQEFSTSISGSKDGSTTSESTVCSVSKEGDFKNRFARDTADSEITSKSTIDCVHEEQGLTTHKSYAFDINTAIKNVEDILSNEDLNTDEALSEGAKTGDYSKSTMSSEGSEGNDKDESIDEIMSKSTLDSVHEEQGFTVDGFRKSDVVDPSTVSTEVEDNFSSDGFDKMETERENDKLVDSKKSIVFTENSKGNDKDVSIDEITSKSILESVHDEQEFTAEHFPKSDVIDTNAVATKFEDNFCNEAFDETGTETKNGRQDSRILGYIDDSRLKSTLDSMHEEKWFIAEPAQKLDLVDIKATASKDVDRVSNEGSGEAEAQSEDAKLECSSKSIISYDNSNGNDEDGSGDEITSKSMLESVGEEQGLTAEHFQTSDAIDITIVTTEFEDKLSNEGFDKAETQEKDAKPEDSLKSLSSEGSSSSDKDGSIDEERSSSPLAQPVRVEHDTETGSSLKEDEKPEGFKEGSHMNSLTSDTKDTHPGKDENREDTHTISCSTCKEDSNAVGTQKQANDISLMKRISRGSNASCQQRADALESLLELCAQLLQQGNLEELAAVLRPFGEDAVSVSSRETAILLTKSLMASQKLNPET* 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0268 994 MobiDBLite consensus disorder prediction 546 571 - -
Vra8g0268 994 Gene3D Transferase(Phosphotransferase) domain 1 138 361 - -
Vra8g0268 994 SUPERFAMILY Protein kinase-like (PK-like) 52 331 IPR011009 -
Vra8g0268 994 CDD STKc_Nek 55 310 - -
Vra8g0268 994 MobiDBLite consensus disorder prediction 495 523 - -
Vra8g0268 994 MobiDBLite consensus disorder prediction 851 868 - -
Vra8g0268 994 MobiDBLite consensus disorder prediction 795 815 - -
Vra8g0268 994 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 552 649 - -
Vra8g0268 994 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 670 784 - -
Vra8g0268 994 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 50 556 - -
Vra8g0268 994 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 778 838 - -
Vra8g0268 994 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 838 980 - -
Vra8g0268 994 MobiDBLite consensus disorder prediction 710 729 - -
Vra8g0268 994 MobiDBLite consensus disorder prediction 730 781 - -
Vra8g0268 994 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 552 649 - -
Vra8g0268 994 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 778 838 - -
Vra8g0268 994 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 838 980 - -
Vra8g0268 994 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 670 784 - -
Vra8g0268 994 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 50 556 - -
Vra8g0268 994 SMART serkin_6 56 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0268 994 MobiDBLite consensus disorder prediction 795 912 - -
Vra8g0268 994 Gene3D Phosphorylase Kinase; domain 1 37 135 - -
Vra8g0268 994 ProSiteProfiles Protein kinase domain profile. 56 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g0268 994 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672|GO:0006468
Vra8g0268 994 MobiDBLite consensus disorder prediction 710 781 - -
Vra8g0268 994 MobiDBLite consensus disorder prediction 880 898 - -
Vra8g0268 994 Pfam Protein kinase domain 56 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0268 Vra-Chr8 3432170 3440449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0268 60 339 MAP Kinase Kinase Kinase AT1G09000 28.763 1.11e-29 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vra8g0268 Pkinase 2e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0268 K08857 - gmx:100818558 1243.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0238 3 2682307 2688694 Vra8g0268 8 3432170 3440449 PCT