Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0267 ATGGGGAAGAAGAGAAGTAGGGTTTTGGAGGATGATGAGGAATTCGAAACCCACTCTTCCGATCAGAACGAGCACACCCTCTACCAGGTTCTTGGTGTGGAGAGAACAGCATCTCAACAGGAAATAAAGAAGGCATACTACAAGTTGGCATTAAAGCTGCATCCTGATAAAAACCCCGGTGATGAGGAAGCTAAAGCTAAGTTTCAGCAATTACAACATGTTATATCAATTCTTGGTGATGAAGAAAAGCGGGCTGTATATGATCAGACTGGTTGTATTGATGATGCCGAGCTTGCAGGGGATGTTGTTCAGAATCTCAAAGAATATTTCAGAGCAATGTACAAAAAGGTCACTGAAACTGATATTGAGGAGTTTGAGGCAAACTATAGGGGATCTGACTCTGAGAAAAATGATTTGATTGACCTCTACAAGAAGTATAAGGGTAAAATGAATAGGTTATTCCATTCAATGCTTTGTTCAGATCCTAAACTTGATTCACACCGATTCAAGGATATTCTTGATGAGACTATAGCTGCTGGAGAACTAAAGGAAACAAAAGCCTACAAGAAATGGGCAAAGAAATTATCAGAAATCAAGCCACCTACTAGTCCAATAAGAAGGCGAGCACAATCATCAAAGAAACAATCAGAAACAGATCTGGGTGCCATCATATCACAGCGTCAACATGAGAGGAAACACCGCCTTAATTCTATGTTCTCATCTCTAATTTCAAAGTATGGTGGGGATCAAATGCCAGAGCCCTCTGAAGAGGAATTTGAAGCTGCACAGAGAAAACTGGAAAAACGTAGGTCCTCAAAAAAGTCAAAGCAAAGATAA 837 0.4026 MGKKRSRVLEDDEEFETHSSDQNEHTLYQVLGVERTASQQEIKKAYYKLALKLHPDKNPGDEEAKAKFQQLQHVISILGDEEKRAVYDQTGCIDDAELAGDVVQNLKEYFRAMYKKVTETDIEEFEANYRGSDSEKNDLIDLYKKYKGKMNRLFHSMLCSDPKLDSHRFKDILDETIAAGELKETKAYKKWAKKLSEIKPPTSPIRRRAQSSKKQSETDLGAIISQRQHERKHRLNSMFSSLISKYGGDQMPEPSEEEFEAAQRKLEKRRSSKKSKQR* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0267 278 MobiDBLite consensus disorder prediction 199 278 - -
Vra8g0267 278 CDD DnaJ 26 80 IPR001623 -
Vra8g0267 278 ProSiteProfiles dnaJ domain profile. 26 91 IPR001623 -
Vra8g0267 278 MobiDBLite consensus disorder prediction 205 223 - -
Vra8g0267 278 PRINTS DnaJ domain signature 28 46 IPR001623 -
Vra8g0267 278 PRINTS DnaJ domain signature 46 61 IPR001623 -
Vra8g0267 278 PRINTS DnaJ domain signature 63 83 IPR001623 -
Vra8g0267 278 PRINTS DnaJ domain signature 83 102 IPR001623 -
Vra8g0267 278 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN-RELATED 2 277 IPR042977 -
Vra8g0267 278 Pfam DnaJ domain 27 88 IPR001623 -
Vra8g0267 278 PANTHER CHAPERONE DNAJ DOMAIN PROTEIN 2 277 - -
Vra8g0267 278 MobiDBLite consensus disorder prediction 1 21 - -
Vra8g0267 278 Gene3D DnaJ domain 11 121 IPR036869 -
Vra8g0267 278 MobiDBLite consensus disorder prediction 1 22 - -
Vra8g0267 278 SMART dnaj_3 25 83 IPR001623 -
Vra8g0267 278 SUPERFAMILY Chaperone J-domain 24 97 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0267 Vra-Chr8 3411148 3413828 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0267 28 88 C2H2 Transcription Factor Family AT1G74250 42.424 1.10e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0267 K09529 - gmx:100781463 443.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0267 8 3411148 3413828 Vra8g0267 8 3411148 3413828 ECH
Vra3g0237 3 2677112 2679674 Vra8g0267 8 3411148 3413828 PCT