Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0260 ATGGAACAAACCATGCTTGAAGCCATTCAGTTCAACGAGGAAATCCAAGGCATCATAGCTCCGGCGCCGGAAACCGCCAGTTCCTTCACTGCGCTGCTCGAACTCCCGCCGACGCAGGCCGTCGAGCTCCTCCATTCGCCGGAGCGAGCCGGGAAACCACCGCGCCATAATCCAAAACCCTATCCGTTGACCTCATTTGCTTCCGCCTCCGCTTCGTCCGCCAACCTGACCTTCCCGTCAAACGCAGCGCTGATTGAACGCGCTGCCAGGCTCTCTGTCTTCGCCGGAGAGAATTCTAACTCAAACTCCAACTCGAACTCGACGGAGATTAAGCGAGAGCTGCCGGAGACCGATTCCAACCCGAGTTCAACTCAGGGCGGCGGCTCTGCCTCCGATCCCACCCTGGAGAACAAGGACGAGAAGGGCCTGAAGAGGAAGGAGCGAGAGAAGAAGGTGAAGGCATCTTCGAAGAAGAGCAAGAGTGTAGTCCCAGACGATAGTTCCTGCGACGGCCAGAAACTTCCGTACGTTCACGTTCGAGTTCGTCGAGGTCAAGCCACTGATAGCCATAGCTTAGCAGAAAGGGCTAGGAGAGAGAAGATAAATGCTCGGATGAAGCTTTTGCAAGAGCTGGTCCCGGGTTGCAATAAGATATCAGGTACAGCATTGGTTCTGGATAAAATCATCAACCATGTGCAATCTCTACAACATGAAGTGGAGATATTATCAATGAAACTGGCAGCAGTGAACCCAGTAATTGATTTCAACCTTGACAGCTTATTGGCTACCGAAGGAGTCTCTCCAATGGACTGTAACTTCCCTCCCACAGTTGCACCCGTCGTCTGGCCAGAAATCCCGCAGAATGCAAACAGACAACAATATCAGCAACCGTGGCAGTTCGATGCATTCCACCACCAGCCCATTTGGGGCAGGGAAGAAGACAACACGAATTTTATGACTCCAGAAAACTCACTCTTGAGTTATGACTCATCGGCTAATTCAGTATCTCTGCATTCAAATCAGTTGAAGATGGAGCTCTGA 1041 0.5178 MEQTMLEAIQFNEEIQGIIAPAPETASSFTALLELPPTQAVELLHSPERAGKPPRHNPKPYPLTSFASASASSANLTFPSNAALIERAARLSVFAGENSNSNSNSNSTEIKRELPETDSNPSSTQGGGSASDPTLENKDEKGLKRKEREKKVKASSKKSKSVVPDDSSCDGQKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDKIINHVQSLQHEVEILSMKLAAVNPVIDFNLDSLLATEGVSPMDCNFPPTVAPVVWPEIPQNANRQQYQQPWQFDAFHHQPIWGREEDNTNFMTPENSLLSYDSSANSVSLHSNQLKMEL* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0260 346 Pfam Helix-loop-helix DNA-binding domain 189 236 IPR011598 GO:0046983
Vra8g0260 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 185 235 IPR011598 GO:0046983
Vra8g0260 346 MobiDBLite consensus disorder prediction 43 64 - -
Vra8g0260 346 MobiDBLite consensus disorder prediction 134 164 - -
Vra8g0260 346 MobiDBLite consensus disorder prediction 96 110 - -
Vra8g0260 346 MobiDBLite consensus disorder prediction 96 169 - -
Vra8g0260 346 MobiDBLite consensus disorder prediction 117 132 - -
Vra8g0260 346 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 346 - -
Vra8g0260 346 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 346 IPR024097 GO:0006355
Vra8g0260 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 183 254 IPR036638 GO:0046983
Vra8g0260 346 Gene3D - 182 253 IPR036638 GO:0046983
Vra8g0260 346 SMART finulus 191 241 IPR011598 GO:0046983
Vra8g0260 346 CDD bHLH_AtBPE_like 175 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0260 Vra-Chr8 3321567 3329010 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0260 6 346 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 49.067 1.06e-92 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra8g0260 HLH 4.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0260 - - gmx:100799133 522.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0231 3 2598085 2611619 Vra8g0260 8 3321567 3329010 PCT