Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0257 ATGGATTCCCATACCCATCATCATCAGGATTACCAGCTTCATCTCCATCAGAACCAACCCTCTTCTGGGTTGCTTCGTTTTCGCTCTGCACCCAGTTCGCTCTTTTCAAATCTCACACCTTTTGTCAGCTACGGTGCTGACACTGCTGCTTCAAGTAGCTTCCGGGAGTTGGAAGAAAGCAGCAACCAAAAGTGTTGTTCTAAGGATTTGAGTTCGATGAATTCGCATAAGGGTTATGGTGGGGGGTTGCCACCTCACTATCCGAGACATGGTTCTTCATCTGCTACTTCCAGTTCTTCTATGGAAGGGTCTTATGGGTTGGTTGGTTCAATGGGAATGGATCATGAAGCTCCAAATAAGGGCTTCGGGTCAAGTCTTCTCAGGCAGAGTAGCTCTCCTGCTGGCCTTTTCTCCAACAACAATGTTTCATTCCAAAATGGGTTTGTCAGCATGAAAGGTGTTGGAAACTATGGTGGGGTGAATGACAATAATGGTGAACTGAGTCCATGTATTAGCAGGTTGAAGAATCAGATTAACTTCTCACCAAGAAATTCTTCTTCCCTGGGAATGTTGTCTCAGATCTCTGAAATAGGGAATGAAGACATGGAGACAACTAGTCCTGATGATAATACCAGTCATGGAGGTAATGATACTCAACATTTTGGCCCTGGATTCCCTTATGGTTCTTGGAATGAGACTCCACAACTGTCAGAAAATCTCAGTGGCTTGAAAAGAGGGAGAAGTGACAACGAAAAGATCTTTTCTGATGTTCAGAATGGAGAACCTGGAAACCAAGTTCATATATTATCACATCACTTGAGTTTACCAAAAACTTCAGCAGAGATGATTACCATGGAGAAGTTGCTTCAGTTTCCTGATTCTGTTCCTTGTAAAATCAGAGCAAAGCGAGGGTGTGCTACTCATCCTCGTAGCATTGCTGAAAGGGTGAGAAGAACTCGGATCAGTGAAAGAATGAGGAAATTACAAGAGCTTGTTCCAAACATGGATAAGCAAACCAACACAGCAGACATGTTGGACTTAGCTGTTGAATACATTAAAGATCTTCAGAAACAATTCAAGACTCTTAGTGATAAACGGGCAAACTGCAAGTGTTCAAGCATGCAAAAGGCAGATTCATAA 1140 0.4289 MDSHTHHHQDYQLHLHQNQPSSGLLRFRSAPSSLFSNLTPFVSYGADTAASSSFRELEESSNQKCCSKDLSSMNSHKGYGGGLPPHYPRHGSSSATSSSSMEGSYGLVGSMGMDHEAPNKGFGSSLLRQSSSPAGLFSNNNVSFQNGFVSMKGVGNYGGVNDNNGELSPCISRLKNQINFSPRNSSSLGMLSQISEIGNEDMETTSPDDNTSHGGNDTQHFGPGFPYGSWNETPQLSENLSGLKRGRSDNEKIFSDVQNGEPGNQVHILSHHLSLPKTSAEMITMEKLLQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQKQFKTLSDKRANCKCSSMQKADS* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0257 379 MobiDBLite consensus disorder prediction 1 24 - -
Vra8g0257 379 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 15 375 - -
Vra8g0257 379 MobiDBLite consensus disorder prediction 200 218 - -
Vra8g0257 379 MobiDBLite consensus disorder prediction 76 102 - -
Vra8g0257 379 Pfam Helix-loop-helix DNA-binding domain 310 356 IPR011598 GO:0046983
Vra8g0257 379 PANTHER TRANSCRIPTION FACTOR BHLH130 15 375 - -
Vra8g0257 379 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 308 370 IPR036638 GO:0046983
Vra8g0257 379 MobiDBLite consensus disorder prediction 200 226 - -
Vra8g0257 379 Gene3D - 306 377 IPR036638 GO:0046983
Vra8g0257 379 SMART finulus 311 361 IPR011598 GO:0046983
Vra8g0257 379 CDD bHLH_AtbHLH_like 310 363 IPR045239 -
Vra8g0257 379 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 305 355 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0257 Vra-Chr8 3252600 3256138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0257 14 361 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 47.619 2.51e-86 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra8g0257 HLH 3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0257 - - gmx:100819605 619.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0257 8 3252600 3256138 Vra8g0257 8 3252600 3256138 ECH
Vra8g0257 8 3252600 3256138 Vra2g0525 2 4105581 4109546 ECH
Vra3g0228 3 2555703 2558754 Vra8g0257 8 3252600 3256138 PCT