Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0254 ATGTTCCAAAACTTGCACGCAATCATGGCGGAAACAGAAGCTCAAACCTACGTCCAACTCTTCTTCCTCTGGCTACTCTCCACCATCGTGTTTCGCGCCATACTATGGTCCGTGAGCCGCCATCCCCGCCGTCCACCGGGGCCACCCTCTCTCCCGATCATCGGCCACCTCCACCTGATCTCCGCCCTCCCTCACCGGTCATTCCAGGCACTGGCCACGCGCTACGGGCCCATCATGCAGATCTTCCTGGGGTCTGTTTCGTGCGTTGTGGTTTCGTCCCCGGAACTGGCGAAAGAGTTCCTGAAAACTCACGAGAGTAGCTTCTCGAATCGTTTCGTAAGTTCGGCGGTTCACCACCTGTCGTACGGATCTAAAGGCTTCATCTTCGCGCGCTACGGAAGCTTGTGGAAGTTCATGAAGAAGATTTGCATATCGGAGCTTCTCGGTTCCCGCACCCTCGACCAGTTCCTCCACGTCAGGGAACAAGAGACTCGAAGGTTTCTCCGTGTGTTGCGGACGAAGGGGGAGGCGCGTGAAGCCGTGGATGTAGGCGGGGAGTTGTTGAATCTGACGAACAGTGTGATATCGAGAATGGTGTTGGGACGAACGTGGTGCGAGGGCGAGGTGGCGGAAGTGAGAAAGATGGTGGAGGACACAGTAGAGCTGGCGGGGAAGTTCAATGTGGGAGATTTCGTGTGGGTGTGCAGGTGGTTGGATTTGCAGAGAATGAAGAAGAGGGTTGAAGAGATTGTGGAGAAGTTTGATGGGATGATGGAGAGGGCGATAAGGGAGCATATGGAGGAGAGACAGAGAAGAAACGAGAGAGGAGATGAAGAGGAAAATGTTCGGGATTTGCTTGACATTCTCTTGTACATTCATGAAGATGATAGCAGGGAGATGAAGTTAACCAGAGAGAATGTAAAGGCTTTTATCTTGGACATATTCATGGCAGGAACAGATACATCGGCTATAACAATGGAGTGGGCGCTAGCGGAGTTAATAAGAAACCCTAAGGTGATGGAGAAAGCGAGAGAAGAGATAGATTCGGTGACAGGAAATAACAGTAGAGTGATTGGAGAGTCAGATATTGTTAACCTTCCCTACATGCGAAGCATAGTGAAAGAAACCCTAAGGTTGCACCCGACAACGCCGATGATTGGAAGAGAGTCATCAGAGAAGATGAAGGTTTGTGGGTATGAGATTCCAGAGAAAACGTGGTTGCTTGTGAACTTGTGGTCGATAGGAAGAGACCCTAAGGTTTGGGAAGAGCCTATTGAGTTCAGGCCAGAGAGGTTCATGGGAGAGGAAAAGGAGTTTGATTTAAGAGGACAGAAGTTTGAACTGATGCCATTTGGGACAGGGAGAAGGGTGTGTCCTGGTGCTTCACTTGCACTTCAGCTTGTGACCTCCAACCTTGCTGCTATGGTTCAATGCTTTGATTGGAAGGTTGAAGGGAGTCTTAGCATGGAAGAGAAACCATCCATGACCCTTCCAAGGGCACATCCTTTGCTCTGTGTTCCTGTGCCTCGATTCTCACTTTCCTTCTAG 1548 0.5052 MFQNLHAIMAETEAQTYVQLFFLWLLSTIVFRAILWSVSRHPRRPPGPPSLPIIGHLHLISALPHRSFQALATRYGPIMQIFLGSVSCVVVSSPELAKEFLKTHESSFSNRFVSSAVHHLSYGSKGFIFARYGSLWKFMKKICISELLGSRTLDQFLHVREQETRRFLRVLRTKGEAREAVDVGGELLNLTNSVISRMVLGRTWCEGEVAEVRKMVEDTVELAGKFNVGDFVWVCRWLDLQRMKKRVEEIVEKFDGMMERAIREHMEERQRRNERGDEEENVRDLLDILLYIHEDDSREMKLTRENVKAFILDIFMAGTDTSAITMEWALAELIRNPKVMEKAREEIDSVTGNNSRVIGESDIVNLPYMRSIVKETLRLHPTTPMIGRESSEKMKVCGYEIPEKTWLLVNLWSIGRDPKVWEEPIEFRPERFMGEEKEFDLRGQKFELMPFGTGRRVCPGASLALQLVTSNLAAMVQCFDWKVEGSLSMEEKPSMTLPRAHPLLCVPVPRFSLSF* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0254 515 Coils Coil 240 260 - -
Vra8g0254 515 PRINTS E-class P450 group I signature 72 91 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra8g0254 515 PRINTS E-class P450 group I signature 96 117 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra8g0254 515 PRINTS E-class P450 group I signature 190 208 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra8g0254 515 PRINTS E-class P450 group I signature 306 323 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra8g0254 515 PRINTS E-class P450 group I signature 326 352 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra8g0254 515 PRINTS E-class P450 group I signature 370 388 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra8g0254 515 PRINTS E-class P450 group I signature 410 434 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra8g0254 515 PRINTS E-class P450 group I signature 448 458 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra8g0254 515 PRINTS E-class P450 group I signature 458 481 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra8g0254 515 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 14 512 - -
Vra8g0254 515 PANTHER CYTOCHROME P450 FAMILY PROTEIN 14 512 - -
Vra8g0254 515 Gene3D Cytochrome P450 31 504 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra8g0254 515 SUPERFAMILY Cytochrome P450 39 510 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra8g0254 515 Pfam Cytochrome P450 45 497 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra8g0254 515 PRINTS P450 superfamily signature 317 334 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra8g0254 515 PRINTS P450 superfamily signature 371 382 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra8g0254 515 PRINTS P450 superfamily signature 449 458 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra8g0254 515 PRINTS P450 superfamily signature 458 469 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra8g0254 515 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 451 460 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0254 Vra-Chr8 3199693 3203173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0254 12 510 Cytochrome P450 AT5G06900 45.924 7.36e-158 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0254 K24188 - gmx:100805931 754.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0254 8 3199693 3203173 Vra8g0254 8 3199693 3203173 ECH
Vra8g0254 8 3199693 3203173 Vra3g0224 3 2517356 2519566 PCT