Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0251 ATGGCTTCTTCGAGTGTTAAGAGCACCAACTCAACAACTCAACTTGAACCACTCCCCCCACATCTTCATCATCAACAACCACCACATCATTTTCATCATCATCAAATACCAGACCAACAAATCTCTTTTGGGATGATGCCATCTTCCTCATCACACTCTATCCCTGCAAATTACTTAAGCAAAGATTCTGGAGCTTATGATCTGGGAGAATTGGATCAAGCCTTTTTTTTATATCTTGACGGTCAGGCTGACACTTCTAGTGTTCAAGACCAAAGACAAAGAAGAGCACTTGCTTTTTTTCATTTCAGTTTCAAAGATTCTCTAAGGCAAGAGAACTCATCATCAGGAATGAGGCCACCACCAACTCTCAATATTTTCCCATCTCAGCCTATGCACGCAGTGCCACCACCCAATTCCAAGGTTAGCATGGAGTTACCCTCCACGCAAACCAGTGGCTCCAAGAGACCAGGGTCATCCATAACCAAGCCCAACCCTCACACTGAACCTCCATCTGCACCTGAACCACCCAAAGCTGTAAAGCGAGAGGGAAATCGCAAGGGAGCAACCTCAAGTTCTGAGCAAGAAGCACCCAAAACACCAGATCCTAAGACACTGAGAAGACTTGCTCAGAATAGAGAAGCAGCAAGAAAAAGCAGGCTCAGGAAAAAGGCGTACGTTCAGCAGCTAGAGTCAAGTAGAATTAAGCTTAATCAGCTAGAACAAGAGTTGCAGCGTGCAAGAGCTCAAGGCATATTAATGGGTGGAAATGCCCTTCTGGGAGGTGAGCAAGGTTTTCCTATGGCTATGACTGGCATTAGCTCAGAGGCTGCAATGTTTGACGTGGAATATGCAAGATGGTTAGAGGAACACCAGCGTATAGTGTGCGAACTAAGAGGTGCAGTGCAAGAACACCTCCATGAAAACGAGCTTCGGTTATATGTAGACAATTGTTTGGCTCACTACGACCAAGTAATGAACCTGAAGAGCATAGTGGCGAAAACAGACGTATTCCACCTTTTTTTTGGCATGTGGAAGACCCCAGCTGAACGTTGCTTCATGTGGATCGGTGGTTTCAGACCCTCTGAACTCATCAAGATTATTCTGGGTCAAATCGAGCCTCTCACGGAGCAACAAATACTTGGGATATGTGGGTTGCAACAATCCACACAAGAGGCAGAAGAAGCTCTTTCACAAGGGCTTGATGCCCTAAACCAATCTCTTTCGGACACTTTAACATCGGACTCTCTGTGGTGTCCTCCAAATATGACTAACTACATGGGACAGATGGCCGTGGCAATGAACAAACTCTCCACTCTTGAAAGTTTTGCGAGACAGGCTGATAATCTGAGGCACCAAACCATTCACCGTCTGCAGCAACTTCTAACCACGCGCCAAGCAGCAAGGTGTTTGGTGGCCATTTCTGAGTACTTCCATCGTCTTCGAGCCCTCAGTTCTCTCTGGTTCACGCGCCCTCGCCAAGACTAG 1485 0.4646 MASSSVKSTNSTTQLEPLPPHLHHQQPPHHFHHHQIPDQQISFGMMPSSSSHSIPANYLSKDSGAYDLGELDQAFFLYLDGQADTSSVQDQRQRRALAFFHFSFKDSLRQENSSSGMRPPPTLNIFPSQPMHAVPPPNSKVSMELPSTQTSGSKRPGSSITKPNPHTEPPSAPEPPKAVKREGNRKGATSSSEQEAPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLNQLEQELQRARAQGILMGGNALLGGEQGFPMAMTGISSEAAMFDVEYARWLEEHQRIVCELRGAVQEHLHENELRLYVDNCLAHYDQVMNLKSIVAKTDVFHLFFGMWKTPAERCFMWIGGFRPSELIKIILGQIEPLTEQQILGICGLQQSTQEAEEALSQGLDALNQSLSDTLTSDSLWCPPNMTNYMGQMAVAMNKLSTLESFARQADNLRHQTIHRLQQLLTTRQAARCLVAISEYFHRLRALSSLWFTRPRQD* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0251 494 CDD bZIP_HBP1b-like 203 255 - -
Vra8g0251 494 MobiDBLite consensus disorder prediction 141 165 - -
Vra8g0251 494 Pfam bZIP transcription factor 203 241 IPR004827 GO:0003700|GO:0006355
Vra8g0251 494 MobiDBLite consensus disorder prediction 110 206 - -
Vra8g0251 494 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 206 221 IPR004827 GO:0003700|GO:0006355
Vra8g0251 494 SUPERFAMILY Leucine zipper domain 203 245 IPR046347 GO:0003700|GO:0006355
Vra8g0251 494 Coils Coil 222 249 - -
Vra8g0251 494 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 201 245 IPR004827 GO:0003700|GO:0006355
Vra8g0251 494 MobiDBLite consensus disorder prediction 1 19 - -
Vra8g0251 494 ProSiteProfiles DOG1 domain profile. 276 490 IPR025422 GO:0006351|GO:0043565
Vra8g0251 494 PANTHER TRANSCRIPTION FACTOR TGA9 91 493 - -
Vra8g0251 494 PANTHER BZIP TRANSCRIPTION FACTOR TGA10 91 493 - -
Vra8g0251 494 Pfam Seed dormancy control 294 367 IPR025422 GO:0006351|GO:0043565
Vra8g0251 494 MobiDBLite consensus disorder prediction 1 34 - -
Vra8g0251 494 Gene3D - 202 252 - -
Vra8g0251 494 SMART brlzneu 199 265 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0251 Vra-Chr8 3177802 3184464 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0251 56 494 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 62.335 0.0 538
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vra8g0251 DOG1 9.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0251 K14431 - gmx:100800059 786.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0251 8 3177802 3184464 Vra8g0251 8 3177802 3184464 ECH
Vra3g0003 3 16198 23320 Vra8g0251 8 3177802 3184464 PCT