LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra8g0248	ATGGTTTGCAACTACGTCTGCGTGAATCTCGCATTCGTTGTCTTCTCGGCAGCTTTGATTTCTCGCTGTTTCGGATTTACGGATCCCGCTGATGTGACAGCTCTCCAGGATCTATACAGGACCTTAAACAACCCTCTAGCGCTGAAAGGATGGAACGGTAATGATCCTTGTGAGGAATCTTGGACGGGAATTGCATGTTCCGGGTCATCAGTTATACACATCCAAATTCAACGACTAAACCTTACCGGGCATCTTGGAAGCTTGCTCAATAATCTACAAAACTTAAAGCAACTTGATGTCAGTTTTAACAACATACTTGGGGAAATCCCTCAGGGTTTACCTCCAAATGCAACACATTTAAATATGGCTTGCAACTATTTCAGCGAAAATATCCCCCATTCGTTGTCAACCATGACAAAACTAGCACACCTGAATTTAAGCCACAATTTCTTGTATGGACCCATTGGCAACGTGTTTACTGGCTTATATAATCTCAGAGAAATGGACCTTTCGTACAATAATTTCACCGGTGATCTGCCAAGTTCATTTGGTTCCTTGACAACCCTGGATAGATTATTTCTGCAGAACAACAGATTCACCGGATCAGTCACCTACCTGGCTGAGCTTCCACTCACTGATTTGAACATTCAAGACAATCTGTTTAGCGGCCTACTTCCGCCGCATTTTCAGTCCATACCAAACTTATGGATTGGAGGGAATAAGTTCCAAACCGTGGACAACTCTCCTCCCTGGGCATTTCCCTTGGACAACGTACCCCTTGAGCAAAATACTAGTCGCCCACCCATAACTCAGGCAAATGCCATCGAGAACTACGCTCCTATTAAGTTCTGTAAATCCGTTTCAATCTTTGATCGTGCTTTTCTTTTTGTCTCCACTTTTACAGAAGATTCTACTACGGCAATAGACGAGAGCCTACAAATCCCACCTTATAATGCTGCATCCGTTTTGGGTCCAAAGCGATTAACTTCCCAACCCCATAAAAGAACTGGGGAAACATCAAGAAAAAGCTTTTCCGGAAGAGACAGATTCAATGGAAGGATAAAGGTTTATACGGTAGCGGAGGTTCAGTTGGTTACAAACAGTTTCCATGAAGAAAACCTTCTGGGAGAAGGATCGCTTGGTCCTGTTTATAGAGCTGAATTTCCAAATAACAAGGTTTTGGCTGTGAAGAATATCAACATGGCGGGCATGTCTTTCAGTGAAGAGGAAAAGTTCTTAGATGTCGTGAGCACGGCTTCCCGTTTGAAGCACCCTAACATTGTTTCACTTAAAGGCTACTGTTTGGAGCATGGACAACATCTTCTTGTCTTTGAGTATGTCAGAAATTTAACTCTAGATGATGCTCTTCATAGTACAGCATACAAGCCTTTATCGTGGGGCACACGTCTCCGGATCGCTCTAGGTGTTGGTCGGGCCCTGGACTATTTGCACTCGACGTTCTCCCCTCCTGTCGCCCATGGCAAATTAAAGGCTACCAATGTTCTACTGGACGAAAACCTCATGCCTTGTGTTACTGACTGTGGCTTGGCTATTCTGAGACCACTGATAAGCAGTAAAGCCAAAAACCGGGCTTCCGAGATTGATATTAGAGATACAGGATACAGTTCACCTGACCATGGCCAACCAGGAGTTGGCAGCACGAAGAGCGACATCTTTGCCTTTGGCGTGTTGCTTCTTGAACTATTAACAGGAAGAAAACCTTTCGATGGTTCCAGGCCAAGGGAAGAGCACTATCTGGCAAAGTGGGCTTCATCAAGACTGCATGATAGTGACAGTTTGGAACAGATGGTGGATCCAGCAATCAAACGGACATTTTCATCCAAGGCTCTTTCTCGTTATGCTGATATCATCTCCCTCTGCATTCAGCCAGTGAAGCAATTTCGACCTCCAATGTCTGAAATCGTAGACAATCTTGTATCATTTTCTCAAAAGCTTGTTTCAGAGAGTGGTGAAGCAGATGAAACTGAACTTGATCCACTTGACATGTCTTTTCACACAACTATCTCCCGCTTTAACGGTTCACCTGCTCTGAGCTATGTATCCGCCTGA	2070	0.443	MVCNYVCVNLAFVVFSAALISRCFGFTDPADVTALQDLYRTLNNPLALKGWNGNDPCEESWTGIACSGSSVIHIQIQRLNLTGHLGSLLNNLQNLKQLDVSFNNILGEIPQGLPPNATHLNMACNYFSENIPHSLSTMTKLAHLNLSHNFLYGPIGNVFTGLYNLREMDLSYNNFTGDLPSSFGSLTTLDRLFLQNNRFTGSVTYLAELPLTDLNIQDNLFSGLLPPHFQSIPNLWIGGNKFQTVDNSPPWAFPLDNVPLEQNTSRPPITQANAIENYAPIKFCKSVSIFDRAFLFVSTFTEDSTTAIDESLQIPPYNAASVLGPKRLTSQPHKRTGETSRKSFSGRDRFNGRIKVYTVAEVQLVTNSFHEENLLGEGSLGPVYRAEFPNNKVLAVKNINMAGMSFSEEEKFLDVVSTASRLKHPNIVSLKGYCLEHGQHLLVFEYVRNLTLDDALHSTAYKPLSWGTRLRIALGVGRALDYLHSTFSPPVAHGKLKATNVLLDENLMPCVTDCGLAILRPLISSKAKNRASEIDIRDTGYSSPDHGQPGVGSTKSDIFAFGVLLLELLTGRKPFDGSRPREEHYLAKWASSRLHDSDSLEQMVDPAIKRTFSSKALSRYADIISLCIQPVKQFRPPMSEIVDNLVSFSQKLVSESGEADETELDPLDMSFHTTISRFNGSPALSYVSA*	690

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vra8g0248	689	SUPERFAMILY	Protein kinase-like (PK-like)	346	645	IPR011009	-
Vra8g0248	689	Pfam	Leucine rich repeat	158	199	IPR001611	GO:0005515
Vra8g0248	689	PANTHER	LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE 1-LIKE PROTEIN	331	657	-	-
Vra8g0248	689	PANTHER	LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE 1-LIKE PROTEIN	12	271	-	-
Vra8g0248	689	Gene3D	Phosphorylase Kinase; domain 1	330	446	-	-
Vra8g0248	689	Gene3D	Transferase(Phosphotransferase) domain 1	448	667	-	-
Vra8g0248	689	Pfam	Leucine rich repeat N-terminal domain	29	67	IPR013210	-
Vra8g0248	689	Gene3D	Ribonuclease Inhibitor	28	264	IPR032675	-
Vra8g0248	689	PANTHER	LEUCINE RICH REPEAT KINASE 2	331	657	-	-
Vra8g0248	689	PANTHER	LEUCINE RICH REPEAT KINASE 2	12	271	-	-

Showing 1 to 10 of 13 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra8g0248	Vra-Chr8	3121731	3127681	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra8g0248	306	689	Strubbelig Receptor Gene Family	AT5G06820	55.208	9.67e-135	412

Showing 1 to 1 of 1 entries

Previous1Next

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-V	Vra8g0248		PK_Tyr_Ser-Thr	7.9e-33	CL0016

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra8g0248	-		-	gmx:100793182	1075.85

Showing 1 to 1 of 1 entries

Previous1Next

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vra8g0248	8	3121731	3127681	Vra8g0248	8	3121731	3127681	ECH

Showing 1 to 1 of 1 entries

Previous1Next