Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0248 ATGGTTTGCAACTACGTCTGCGTGAATCTCGCATTCGTTGTCTTCTCGGCAGCTTTGATTTCTCGCTGTTTCGGATTTACGGATCCCGCTGATGTGACAGCTCTCCAGGATCTATACAGGACCTTAAACAACCCTCTAGCGCTGAAAGGATGGAACGGTAATGATCCTTGTGAGGAATCTTGGACGGGAATTGCATGTTCCGGGTCATCAGTTATACACATCCAAATTCAACGACTAAACCTTACCGGGCATCTTGGAAGCTTGCTCAATAATCTACAAAACTTAAAGCAACTTGATGTCAGTTTTAACAACATACTTGGGGAAATCCCTCAGGGTTTACCTCCAAATGCAACACATTTAAATATGGCTTGCAACTATTTCAGCGAAAATATCCCCCATTCGTTGTCAACCATGACAAAACTAGCACACCTGAATTTAAGCCACAATTTCTTGTATGGACCCATTGGCAACGTGTTTACTGGCTTATATAATCTCAGAGAAATGGACCTTTCGTACAATAATTTCACCGGTGATCTGCCAAGTTCATTTGGTTCCTTGACAACCCTGGATAGATTATTTCTGCAGAACAACAGATTCACCGGATCAGTCACCTACCTGGCTGAGCTTCCACTCACTGATTTGAACATTCAAGACAATCTGTTTAGCGGCCTACTTCCGCCGCATTTTCAGTCCATACCAAACTTATGGATTGGAGGGAATAAGTTCCAAACCGTGGACAACTCTCCTCCCTGGGCATTTCCCTTGGACAACGTACCCCTTGAGCAAAATACTAGTCGCCCACCCATAACTCAGGCAAATGCCATCGAGAACTACGCTCCTATTAAGTTCTGTAAATCCGTTTCAATCTTTGATCGTGCTTTTCTTTTTGTCTCCACTTTTACAGAAGATTCTACTACGGCAATAGACGAGAGCCTACAAATCCCACCTTATAATGCTGCATCCGTTTTGGGTCCAAAGCGATTAACTTCCCAACCCCATAAAAGAACTGGGGAAACATCAAGAAAAAGCTTTTCCGGAAGAGACAGATTCAATGGAAGGATAAAGGTTTATACGGTAGCGGAGGTTCAGTTGGTTACAAACAGTTTCCATGAAGAAAACCTTCTGGGAGAAGGATCGCTTGGTCCTGTTTATAGAGCTGAATTTCCAAATAACAAGGTTTTGGCTGTGAAGAATATCAACATGGCGGGCATGTCTTTCAGTGAAGAGGAAAAGTTCTTAGATGTCGTGAGCACGGCTTCCCGTTTGAAGCACCCTAACATTGTTTCACTTAAAGGCTACTGTTTGGAGCATGGACAACATCTTCTTGTCTTTGAGTATGTCAGAAATTTAACTCTAGATGATGCTCTTCATAGTACAGCATACAAGCCTTTATCGTGGGGCACACGTCTCCGGATCGCTCTAGGTGTTGGTCGGGCCCTGGACTATTTGCACTCGACGTTCTCCCCTCCTGTCGCCCATGGCAAATTAAAGGCTACCAATGTTCTACTGGACGAAAACCTCATGCCTTGTGTTACTGACTGTGGCTTGGCTATTCTGAGACCACTGATAAGCAGTAAAGCCAAAAACCGGGCTTCCGAGATTGATATTAGAGATACAGGATACAGTTCACCTGACCATGGCCAACCAGGAGTTGGCAGCACGAAGAGCGACATCTTTGCCTTTGGCGTGTTGCTTCTTGAACTATTAACAGGAAGAAAACCTTTCGATGGTTCCAGGCCAAGGGAAGAGCACTATCTGGCAAAGTGGGCTTCATCAAGACTGCATGATAGTGACAGTTTGGAACAGATGGTGGATCCAGCAATCAAACGGACATTTTCATCCAAGGCTCTTTCTCGTTATGCTGATATCATCTCCCTCTGCATTCAGCCAGTGAAGCAATTTCGACCTCCAATGTCTGAAATCGTAGACAATCTTGTATCATTTTCTCAAAAGCTTGTTTCAGAGAGTGGTGAAGCAGATGAAACTGAACTTGATCCACTTGACATGTCTTTTCACACAACTATCTCCCGCTTTAACGGTTCACCTGCTCTGAGCTATGTATCCGCCTGA 2070 0.443 MVCNYVCVNLAFVVFSAALISRCFGFTDPADVTALQDLYRTLNNPLALKGWNGNDPCEESWTGIACSGSSVIHIQIQRLNLTGHLGSLLNNLQNLKQLDVSFNNILGEIPQGLPPNATHLNMACNYFSENIPHSLSTMTKLAHLNLSHNFLYGPIGNVFTGLYNLREMDLSYNNFTGDLPSSFGSLTTLDRLFLQNNRFTGSVTYLAELPLTDLNIQDNLFSGLLPPHFQSIPNLWIGGNKFQTVDNSPPWAFPLDNVPLEQNTSRPPITQANAIENYAPIKFCKSVSIFDRAFLFVSTFTEDSTTAIDESLQIPPYNAASVLGPKRLTSQPHKRTGETSRKSFSGRDRFNGRIKVYTVAEVQLVTNSFHEENLLGEGSLGPVYRAEFPNNKVLAVKNINMAGMSFSEEEKFLDVVSTASRLKHPNIVSLKGYCLEHGQHLLVFEYVRNLTLDDALHSTAYKPLSWGTRLRIALGVGRALDYLHSTFSPPVAHGKLKATNVLLDENLMPCVTDCGLAILRPLISSKAKNRASEIDIRDTGYSSPDHGQPGVGSTKSDIFAFGVLLLELLTGRKPFDGSRPREEHYLAKWASSRLHDSDSLEQMVDPAIKRTFSSKALSRYADIISLCIQPVKQFRPPMSEIVDNLVSFSQKLVSESGEADETELDPLDMSFHTTISRFNGSPALSYVSA* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0248 689 SUPERFAMILY Protein kinase-like (PK-like) 346 645 IPR011009 -
Vra8g0248 689 Pfam Leucine rich repeat 158 199 IPR001611 GO:0005515
Vra8g0248 689 PANTHER LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE 1-LIKE PROTEIN 331 657 - -
Vra8g0248 689 PANTHER LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE 1-LIKE PROTEIN 12 271 - -
Vra8g0248 689 Gene3D Phosphorylase Kinase; domain 1 330 446 - -
Vra8g0248 689 Gene3D Transferase(Phosphotransferase) domain 1 448 667 - -
Vra8g0248 689 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Vra8g0248 689 Gene3D Ribonuclease Inhibitor 28 264 IPR032675 -
Vra8g0248 689 PANTHER LEUCINE RICH REPEAT KINASE 2 331 657 - -
Vra8g0248 689 PANTHER LEUCINE RICH REPEAT KINASE 2 12 271 - -
Vra8g0248 689 SUPERFAMILY L domain-like 28 244 - -
Vra8g0248 689 Pfam Protein tyrosine and serine/threonine kinase 372 645 IPR001245 GO:0004672|GO:0006468
Vra8g0248 689 ProSiteProfiles Protein kinase domain profile. 369 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0248 Vra-Chr8 3121731 3127681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0248 306 689 Strubbelig Receptor Gene Family AT5G06820 55.208 9.67e-135 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vra8g0248 PK_Tyr_Ser-Thr 7.9e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0248 - - gmx:100793182 1075.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0248 8 3121731 3127681 Vra8g0248 8 3121731 3127681 ECH