Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0246 ATGAGTTTTTCTGGTTCAGTGAGCAAAGCAGCAGTACCCTCTTCTTCCTCATCACCCAACTCTTCCACTGAGTCGCTTGATGGGTTGAAATTTGGCCAGAAAATCTACTTTGAGGATGTGAGTGTTGCTGCTGCTGCTGCTGCTGCAACCACTCAAGGGGCGAAAACAAGTGGTGGGGTTTCTTCTTCTTCTTCTTCTTCTTCAAAGAAGGGAAGGGGTGGTTCAGTGCAATCTGCTCAGCCTCCTAGATGTCAGGTTCAGGGCTGCAATGCAGATCTGAGTGGAGCTAAGGCTTACTATTCTAGGCACAAGGTCTGTGCAATGCACTCCAAGTCTCCAACGGTCATTGTGGCTGGTCTGGAACAGAGGTTTTGCCAACAGTGTAGCAGGTTTCATCTGCTCTCTGAATTTGATCAAGGAAAGCGAAGCTGCCGCCGGCGACTTGCCGGCCATAATGAGCGCCGGCGTAAGCCTCCACCCAGCTCCATTTTAGCATCTCGCAATGGCAGGCTTTCGTCCCCTATTTTTGCAGATAACAATGGTAGAGCTGGTGGCTTTCTCATGGAATTTTCTTCATATCCAAAGCTTACATTGAGAACCACCTTGCCAACTCCAAGATCAGCCGAGCCTCTACCCGGAAACCATGCTGCAACCTGGCAGACCGGCTCAGGCACGCCATCTGAATTTTTCATGCATGGATCAGGGAGTGGTGGAACAAGCTTCCTTGGTTCCAAGCATCCTTTTGTGGAAAGCTACACTGGAGTCACTGACTCAAACTGTGCTCTCTCTCTTCTGTCAAATCAAACATGGGGTTCCAGAATCACACAACCAAGTGTTGAACTGAACAACAATAATAACAACAACAATAACTTGTTGAATTTCAATGGAACATCCATAACACAATTCACTGCTGCTTCCTCACAGTTTGCAGCCATCCATCAACTTCCAAATGCCACCTCATGGTACCTGAAGGCCCTTGACTCGCCGGAGGGTGTTCCTGATCTCGGCCTAGGCCAAATTTCGCCGTCTCTTCATAGCCATCTTCATGGTGAGCTTGATCTGCCACATCACGGTAGGAGGCATTACATGGATCTTGGGGATTCCAGGGCCTGTGAGTCTCCTCAGTGGTCACTTTAA 1137 0.489 MSFSGSVSKAAVPSSSSSPNSSTESLDGLKFGQKIYFEDVSVAAAAAAATTQGAKTSGGVSSSSSSSSKKGRGGSVQSAQPPRCQVQGCNADLSGAKAYYSRHKVCAMHSKSPTVIVAGLEQRFCQQCSRFHLLSEFDQGKRSCRRRLAGHNERRRKPPPSSILASRNGRLSSPIFADNNGRAGGFLMEFSSYPKLTLRTTLPTPRSAEPLPGNHAATWQTGSGTPSEFFMHGSGSGGTSFLGSKHPFVESYTGVTDSNCALSLLSNQTWGSRITQPSVELNNNNNNNNNLLNFNGTSITQFTAASSQFAAIHQLPNATSWYLKALDSPEGVPDLGLGQISPSLHSHLHGELDLPHHGRRHYMDLGDSRACESPQWSL* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0246 378 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 17 12 374 - -
Vra8g0246 378 MobiDBLite consensus disorder prediction 148 169 - -
Vra8g0246 378 MobiDBLite consensus disorder prediction 1 26 - -
Vra8g0246 378 Pfam SBP domain 84 157 IPR004333 GO:0003677
Vra8g0246 378 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 12 374 IPR044817 GO:0003677
Vra8g0246 378 ProSiteProfiles Zinc finger SBP-type profile. 81 158 IPR004333 GO:0003677
Vra8g0246 378 MobiDBLite consensus disorder prediction 50 84 - -
Vra8g0246 378 MobiDBLite consensus disorder prediction 48 84 - -
Vra8g0246 378 SUPERFAMILY SBT domain 82 163 IPR036893 GO:0003677|GO:0005634
Vra8g0246 378 Gene3D - 74 145 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0246 Vra-Chr8 3098517 3102236 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0246 29 378 SBP-box Gene Family AT2G42200 42.328 4.19e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vra8g0246 SBP 5.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0246 - - vra:106770061 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0246 8 3098517 3102236 Vra8g0246 8 3098517 3102236 ECH
Vra3g0011 3 124690 129115 Vra8g0246 8 3098517 3102236 PCT