Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0245 ATGTATCATTCTTCGCAGGAGTTGAACGGAGTTCATAACAGTGTGGCCAACGTTGGAGGCTCAGAAAACAACAGCTTCAACTTCCAACATCATGAGCAACATCTGTTTGATGTCCCCGTTTCATGTTTGAACTTCGATTCGCAAAATTTTCTGTGTCAGTCTTCTGGGGACCACTCGGCTCCAGTGTTCGGAAGTGTTCTTGATTCCTTCTTATCCAGCCATGAAGACAAGTTCTGTGAAACGTATAATGTTTACGAGCATTTCAGAAACGAGAAAAATAACATCTTGGAGGGTGGTGCTTCTGCCCCAGTTAATGGGGTTGAGGTTGTTTCTGCCACTTCTGGAAACTCAGCTTCTAGCATGGTCCCAACGAGGAAAAAAGGAATAAAATGGACCGAAGATTTGCATGAACAGTTCGTAGCAGCTGTTAACAATCTTGGTGGTGCTCAAAAAGCAACGCCCAAGGCAGTGCTAAAGATGATGAATTCAAAGTCCCTGACAATTTTTCATGTTAAAAGCCACTTGCAGAAATATCGATCCACTATGTACGTGAAGAACACTTCAAGAGGTATAAATTCTTGTTCAATGTGTTCATGTATAGCAGAAATGCATGCCTTGTTTTAA 624 0.4199 MYHSSQELNGVHNSVANVGGSENNSFNFQHHEQHLFDVPVSCLNFDSQNFLCQSSGDHSAPVFGSVLDSFLSSHEDKFCETYNVYEHFRNEKNNILEGGASAPVNGVEVVSATSGNSASSMVPTRKKGIKWTEDLHEQFVAAVNNLGGAQKATPKAVLKMMNSKSLTIFHVKSHLQKYRSTMYVKNTSRGINSCSMCSCIAEMHALF* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0245 207 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 96 187 - -
Vra8g0245 207 SUPERFAMILY Homeodomain-like 124 181 IPR009057 -
Vra8g0245 207 Pfam Myb-like DNA-binding domain 130 179 IPR001005 -
Vra8g0245 207 Gene3D - 125 184 - -
Vra8g0245 207 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 96 187 IPR044848 GO:0003700
Vra8g0245 207 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 126 180 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0245 Vra-Chr8 3082761 3083764 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0245 114 188 G2-like Transcription Factor Family AT5G29000 60.000 9.93e-26 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vra8g0245 Myb_DNA-binding 8e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0245 - - vra:111242241 426.017