Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0244 ATGAACGAGTACAAGATTGATTGTGTTGGACGGATTCAACAAAGCTATGGTCTAAATGGGGATTTGAGTTCAGAGTTTGGCAATTGTTCTAGTCAATGTTTTGATATGGCCAGTGGTGGATTTGAAGAGGAATCACACATAGGCCAAACCAAATCATCTAGCAGCATTATAAGCCGTTTTGAATCACCAGCTTCAGCCTTTTATGCAACAGAAATCTGCATGGGATTCCCACAATATGATAGACTAGTTGGTAACCCCTCTTTGATATCTCAATTCTCTAAGATCAATGATGTGGAATTCCCTTTGTATCAATCTCCAAGGCAAAACCTTTTCTTGGCTTCATTGGCAAACCAACCTGCCCCTAACTTTGAGTTGTCAAATCCCTTGCAAGCAATGCTCTTATCCCATGTGAATAGTGATCAATGTGTTAGATCTCCTGAAAAGTCTAATAAAATCCCATCTGGGAATTTCCCTGGCAGCAGTTTTCTTCCAATTGAACAACCCAAGTTGTTCATTGATGATGCTGCAAGCCCTTCGGTTCCTTGTATAGGAAATCAGGATCAAAGAGATTGTTGTGGCTCATACAATTTACCTGCTGCACAGATTAGCTTCTCTTCTCAGCAAGAGATGCTGTCACCAACACTCTCAGCAGGTAGTTTGCTAACTTCTTCTGGAAACTCTTCTTCAAATGGACCAGTAGTCTCAAGTAAAACAAGAATAAGATGGACTCAGGAACTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGAGGTGCTGAGAAAGCAACGCCAAAAGCTATATTAAGGCTGATGGAATCAGATGGATTGACCATTTTCCATGTCAAAAGTCATCTGCAGAAATATAGAATTGCCAAATACATGCCACAATCAACTCAAGGGAAATCTGAGAAACGAACCAATGTAGAGAATGTGCATCTTGATGCCAAAACTGGCTTGCAAATCAGAGAGGCACTTCAGTTGCAGCTAGATGTTCAGAGGCGCCTTCATGAACAACTAGAGATTCAGAGAAAACTACAGTTGAGGATTGAGGAACAAGGTAAGCAGCTGAAAATGATGTTTGACCAACAGCAGAAGACAAGTGACAGCAACTTGAGTACTCTGAATTTGGGCAATACAACTAATAATGATAGACCTATTAGTTCTAAAGATGTTCAGGTTTCAGTTTCCGAAGGATCTAAAAGATTATTTATTCCTTCCAACATAACTTAG 1233 0.4023 MNEYKIDCVGRIQQSYGLNGDLSSEFGNCSSQCFDMASGGFEEESHIGQTKSSSSIISRFESPASAFYATEICMGFPQYDRLVGNPSLISQFSKINDVEFPLYQSPRQNLFLASLANQPAPNFELSNPLQAMLLSHVNSDQCVRSPEKSNKIPSGNFPGSSFLPIEQPKLFIDDAASPSVPCIGNQDQRDCCGSYNLPAAQISFSSQQEMLSPTLSAGSLLTSSGNSSSNGPVVSSKTRIRWTQELHEKFVECVNRLGGAEKATPKAILRLMESDGLTIFHVKSHLQKYRIAKYMPQSTQGKSEKRTNVENVHLDAKTGLQIREALQLQLDVQRRLHEQLEIQRKLQLRIEEQGKQLKMMFDQQQKTSDSNLSTLNLGNTTNNDRPISSKDVQVSVSEGSKRLFIPSNIT* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0244 410 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 36 408 - -
Vra8g0244 410 Pfam Myb-like DNA-binding domain 241 290 IPR001005 -
Vra8g0244 410 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 236 294 IPR017930 -
Vra8g0244 410 Coils Coil 323 343 - -
Vra8g0244 410 Pfam MYB-CC type transfactor, LHEQLE motif 320 367 IPR025756 -
Vra8g0244 410 SUPERFAMILY Homeodomain-like 235 291 IPR009057 -
Vra8g0244 410 Gene3D - 236 295 - -
Vra8g0244 410 MobiDBLite consensus disorder prediction 363 393 - -
Vra8g0244 410 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 36 408 IPR044848 GO:0003700
Vra8g0244 410 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 237 292 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0244 Vra-Chr8 3074173 3076757 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0244 221 364 G2-like Transcription Factor Family AT4G28610 57.143 2.45e-50 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vra8g0244 Myb_DNA-binding 4.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0244 - - gmx:102668541 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g0244 8 3074173 3076757 Vra8g0244 8 3074173 3076757 ECH