Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g0239 ATGGCCTCCAAAGGTCCCAGGTCTAAGATTGATCATGAGAGCAGAGCCAAACGGCAAAAGGCTCTTGAAGCTCCACGGGAGCCTCGCCGACCGAAAACTCATTGGGACCATGTCTTAGAAGAAATGGTGTGGTTATCAAAGGATTTTGAATCAGAGAGGAAATGGAAATTAGCTCAGGCAAAGAAAGTAGCTTTAAGAGCCAGCAAAGGCATGATAGATCAGGCTACAAGGGGTGAAAAGAAGATGAAGGAAGAAGAACAGCGATTAAGAAAGGTTGCACTAAATATTTCTAAGGATGTTAAGAAATTCTGGACAAAAATAGAAAAGCTGGTTCTTTACAAACATCAAATGGAACTTGATGAAAAGAAGAAAAAGGCACTTGACAAACAGCTTGAGTTTTTATTAGGGCAAACAGAGAGGTACTCAACAATGCTGGCGGAAAATCTTGTGGATGCTCATAAATCAGGAGAGAATAATTCTGCAGAGCATCACATGAGTATTCAACGCAAAGATGCACATGGAGATGTTATTAATGAACCTAAGGAAGCTGATGTTGTGGAGTATCAATCAGATGCTGCCGACAATGATGATGAATATGATGTACAATCTGATGATGAATCGGAGGACGACGAGCAAACAATTGAGCAAGATGAGGCTTTTATTACTAAAGAAGAGAGACAAGAGGAATTGGAAGCTTTGCACAATGAAATGAATCTTCCGATTGAGGAGTTACTCAAGCGTTATGCAGGGGAGAAAGGAGAATCTGTGATGAAAGAAAGTAGTCCAGAGCATAGTGAAGATGTTGAGAAAATAGTAAGAACAACTGGTGATGAAAATGGTGATGATCATTTATCTGTTAACAAAAATGGTACAAACAACTCCAGTATGGTCTCTGGTCGACGTTGTGAGGAAAGTAATGGTGATATTGCTGCACCAACAAAAAATCTATCTCAATATGAGGAAGGTCAATCTGAAAATCTAAAGGAGGTTCCCAGTGAGACAGCCAATGAAGATTTATCGTATGATTTTACTGATGAAGAGGAAGATGGTGACTTTTTGCTTGGCACAGAAGACAAGGATGATGAAACAACCTTATCAGAGGAGGAAAAACTGGAAAGAGTTGATGCAATAGATCCCAAGGATGAGATTGCATTATTACAAAAAGAGAGTGACATGCCTGTTGAGGAACTGCTTGCAAGGTATAAAAGGGACCCGAGTGACAACGAAGATGGGGAATATGAAACTGATTATGCTTCTGCTTTATCCGAAGACCATTCAGACTCTCCTGTCCATGAAGATGCTGGGCAAAAGGATTCTGCCATTCCTATGGATGAAGATATAAAGTCTGGTGAACACCTGGCTACCACACAGTCCCAGACAGAAGAACATTGGGAATCACAAAATTTGGATCAAAGAGAAAGTGAGCATATAATAGCTGATGCAGCAGCTGCTGCAAGATCAGCACAACCTACTGGAAACACCTTCTCCACAACTAATGTGCGCACAAAGTTCCCTTTTCTTCTCAAGTACTCTCTTCGTGAGTATCAACATATTGGATTGGATTGGCTTGTCACCATGTATGAAAAAAGACTGAATGGAATTTTGGCAGATGAAATGGGTCTTGGAAAAACAATTATGACCATATCTTTGCTTGCACATCTTGCTTGTGAAAAAGGGATTTGGGGTCCGCATTTAATTGTGGTACCAACTAGTGTAATGCTTAACTGGGAGACCGAATTTTTGAAGTGGTGTCCTGCCTTTAAAATATTGACTTATTTTGGAAGTGCAAAGGAGCGAAAACTTAAAAGGCAAGGATGGTTAAAACCAAACTCATTTCATGTATGCATAACTACTTATAGATTAGTTATTCAGGACTCCAAAGTTTTCAAGCGCAAAAAGTGGAAATATTTGATCTTAGACGAAGCTCATCTCATTAAAAACTGGAAGTCACAAAGGTGGCAGACACTCTTGAATTTCAATTCAAAAAGGCGGATTCTCTTGACTGGTACACCACTACAGAACGATCTCATGGAACTGTGGTCTCTCATGCATTTCTTAATGCCCCATGTTTTCCAGTCACATCAAGAGTTTAAGGATTGGTTTAGTAATCCTATATCAGGGATGGTAGAGGGAGAAGAAAAAATTAATAAGGAGGTTGTTGACCGCCTGCACAATGTCCTTCGTCCCTTTTTACTCCGTCGACTAAAGCGAGATGTGGAAAAACAACTTCCAATGAAGCATGAACATGTCATATATTGTAGACTATCAAAGAGGCAGCGGAATTTGTATGAGGATTTCATTGCTAGCTCAGAGACTCAAGCAACTCTTGCAAGTGCCAATTTTTTTGGGATGATTAGTATTATCATGCAGCTTCGTAAAGTTTGCAATCATCCTGATCTATTTGAGGGTCGTCCTATTGTAAGTTCGTTTGATATATGTGGCATTGATATTCAGTTAAGTTCTTCTGTTTGCTCTATGCTTTTGCCTAGTCCCTTTTCAGTGGTGGACCTAAGAGGTTTGGGTCTTTTATTTACTGATCTTGACTATAGTATGACTGCATGGGAAAGTGATGAAGTACAAGCTATTGAGACCCCTGGAACCTCAATCATGGAGCGTACTGATATAGTTGAGCTAGAAGTAATTAGACCACTAAATTGTCAAAAAAAGTTGCAAGGAACAAACATTTTTGAAGACATCCAAAGGAAAATCTGGGAAGAGAGGCTAAAACAGGCAAAGGAACGTGCAACAGCTATTGCATGGTGGAACTCCTTGAGATGTAAAAAGAGACCTATGTACTCAACAACTCTGAGGAATCTTGTTACCTTAAGGCATCCTGTATATGACATTCATCTGGTGAAAGCAAACCCTACTTCATATATGTACTCAACAAAGCTGGCTGACATTGTTCTCTCCCCCATTGAACGATTTCAAAAGATGACTGATGTGGTTGAAAGCTTCATGTTTGCAATTCCAGCTGCACGGGCACCCTCTCCTGTTTGCTGGTGCAGTAAAAGTGAGACAACTGTGTTTCTGCAGCCATCTTACAAGCAGAAATGCTCTGAAGTTTTGTTGCCACTACTGTCACCAATCCGACCAGCAATTGTTCGCCGACAAGTGTATTTCCCTGATAGGCGTCTTATACAATTTGACTGTGGGAAACTGCAGGAACTGGCAAATTTGTTGAGAAAATTAAAATCAGAAGGCCACCGAGCTTTGATATTCACCCAGATGACAAAGATGCTTGACATATTAGAGGCATTCATTAATTTATATGGCTATACATACATGCGCTTAGATGGATCAACCCAACCAGAGGAGAGACAAACCTTAATGCAACGCTTTAACACAAACCCCAAATATTTTCTTTTCATCTTGTCAACCCGTAGTGGGGGTGTTGGTATCAATCTAGTTGGAGCTGACACAGTTATTTTTTATGATAGTGACTGGAATCCTGCTATGGATCAACAGGCACAAGATCGATGCCATAGAATTGGTCAGACACGCGAAGTTCATATTTATAGATTGATTAGTGAAAGCACAATTGAGGAGAATATTTTGAAGAAAGCAAATCAGAAGCGAGCACTTGATAATCTCGTTATACAAAGTGGGAGTTATAATACTGAGTTCTTCAAGAAGCTTGATCCTATGGAACTATTTTCAGGCCATAGAACACTTTCAATAAAAAATATGCTGAAGGAGAAAAACCAGAACAATGGGGAAGATTCTGTAACGAATGCAGATGTAGAGGCTGCACTGAAATGTGTTGAAGATGAGGCAGATTACATGGCTTTGAAGAAAGTTGAACTGGAAGAGGCTGTGGACAACCAGGAGTTTACCGAAGAAGCCATTGGGAGACTTGAAGAGGATGAATATGTAAATGAAGATGATGAAACTGCAGAATTAGGTGAATCTGTTTCAAACTTAAATAAAGAGAATGCCTTGGTGCTAAATGGAAATGATCATAAGGAAGACAGACCACCAAACTCTGTTGTTGTCAAAGAAGATGATGCTGATGTGCTGGCTGATGTCAAACAGATGGCTGCAGCTGCAGCTGCAGCTGGACAAGCTATCTCGGCATTTGAAAATGAGCTACGCCCTATTGATCGATATGCCATTCGCTTTCTGGAACTGTGGGATCCAATTATAGATAAAACAGCCTTGGAATCTGAAGTCAGGATTGAGGACACAGAATGGGAGTTGGATCGAATTGAAAAGTACAAGGAGGAGATGGAGGCTGAAATTGATGAAGACGAGGAACCTCTTGTATATGAAAGCTGGGATGCTGATTTTGCAACAATGGCATATCGACAGCAAGTAGAGGCCTTGGCTCAACATCAGTTGATGGAGGAACTTGAATATGAAGCTAGACTGAAAGAAGCTGAGGAAGAAGCTTGTGATTCTAAAAAGACAACACCAGGGGATTTGAAGCCCAAACCTAAAAAGAAACCTAAGAAGGCAAAGTTCAAATCTCTAAAGAAAGGATCCTTAACTTCTGGATTGAAACCTGTGAAAGAAGAGTCACAAGCAGAGCCAATGAACATAGATGATGAGGATATCACTGGTCTGGAATTTGTGTCTCCAAATTCATCCATGCAGAAAAAACGTAAATCTAAAGCGACGACTGATGGTGAAGAAAAGAGACTTAAGAAGTCCAAAAAGTCCAAGAGGGATCCTCCTGACATTTATGTGTCTGATTTAGAATCCAATGCTTTGGTTGTGCAATATGAACATGCAGAATCAAAGACTAGTGAAAGTCTGGTTGATTTGGAACAGAAAACAGCAGGCAGGGGTAAGATGGGAGGAAAAATATCCATCACTCCTATGCCTGTAAAACGGATCTGGACGATAAAGCCAGAAAAAATGAGAAAGGGAAATCATTGGTCCAAAGATTGTATTCCATCAGCTGATTTTTGGCTGGCTCAGGAGGATGCTATATTATGCGCTGTTGTTCATGAATATGGTCCTAACTGGAGTTTGGTTAGCGATATTCTTAATAGCATGACTGCTGGTGGGTCATACAGGGGGAGATATCGACATCCCGTCCATTGCTGTGAGCGGTTTAGAGAACTATTCCAGAAGAATGTATTGTCAATGGACAATGCAAATAATGAGAAGGCCATCACTCCTGGCTCTGGAAAGGCTCTTCTTAAAGTTACAGAGGATAACATACGGATGCTGTTAAATGTTGCTTCTGAGCAGGCAAATAGGGAGTTGCTGCTGCAGAAGCACTTTTTTGCATTGCTTTCATCTGCCTGGAAGGTGGCATCACATGTTGACCGCAGGCAAAATCCAACACCTACCTGTAATGGTCTCTATATTATTGATCAGAGTCTTTTTACTTCCATGGGCCAGCCTTCGCAAAATTCCTTGAAGAAATCCTCTGAAAGGGTGCCATTTACAAATCTGGTCCAGAGTAAGAAGTTAGTAGCAGCTGCACTTGATGATTCCACAACTGGGCAAGTGAATGATAGAGTCATCCTCCCTAACCAAGGGGAAGGCTTGCCAATGAGTGCTGATAAGTTGGATATTACTCTGGAATTCCCAAAAGAGGAGAGTGATGTCTTAGCTTTGTTTCCATCCGTTATAAACTTATCAATACATGGGACTGATCCAACACCATCTTTAAGTAAGCAAACAGGAGATGGCTTTAAAACTTGTCTGTTTATGGCAGAGAATCGTTTCAGGGAGGCAACAAGAATTTGTGAAGAAGACGTCTCTGGATGGGCATCATCTGCATTCCCAACCAGCGATGCAAGGTCTCGACCTGGATCCAGGATACAATCCTCTGGAAAGCAGAAGTCTTCCATATCTGACTCTGCTAAGCCTTCTAGGTCAAAGTCTAAAAGAGCTTCAATTGATGCCAGTGAAATGCATCACCATCAGGCTGACTCAATAGTCCAGTCGGTGCCATCACTTAAGGATCTGAGATTTGATCTCACTTCATTCACTACAGATGAAATTGGACTTACTGCTGTGGACACATGTTTCGCCTTTGACTTGAATGTGGAAAGTTCATGGGAAATGGAGGGTGTTGGAATGATCCCACATGATTATGTTACTGGTTTAATCTCAGACCTTGATGATTGTACAACATTCCCTGAATATACTGACATTAGATAA 6120 0.4083 MASKGPRSKIDHESRAKRQKALEAPREPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKKVALRASKGMIDQATRGEKKMKEEEQRLRKVALNISKDVKKFWTKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLVDAHKSGENNSAEHHMSIQRKDAHGDVINEPKEADVVEYQSDAADNDDEYDVQSDDESEDDEQTIEQDEAFITKEERQEELEALHNEMNLPIEELLKRYAGEKGESVMKESSPEHSEDVEKIVRTTGDENGDDHLSVNKNGTNNSSMVSGRRCEESNGDIAAPTKNLSQYEEGQSENLKEVPSETANEDLSYDFTDEEEDGDFLLGTEDKDDETTLSEEEKLERVDAIDPKDEIALLQKESDMPVEELLARYKRDPSDNEDGEYETDYASALSEDHSDSPVHEDAGQKDSAIPMDEDIKSGEHLATTQSQTEEHWESQNLDQRESEHIIADAAAAARSAQPTGNTFSTTNVRTKFPFLLKYSLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTISLLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKINKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDICGIDIQLSSSVCSMLLPSPFSVVDLRGLGLLFTDLDYSMTAWESDEVQAIETPGTSIMERTDIVELEVIRPLNCQKKLQGTNIFEDIQRKIWEERLKQAKERATAIAWWNSLRCKKRPMYSTTLRNLVTLRHPVYDIHLVKANPTSYMYSTKLADIVLSPIERFQKMTDVVESFMFAIPAARAPSPVCWCSKSETTVFLQPSYKQKCSEVLLPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELANLLRKLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKYFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDNLVIQSGSYNTEFFKKLDPMELFSGHRTLSIKNMLKEKNQNNGEDSVTNADVEAALKCVEDEADYMALKKVELEEAVDNQEFTEEAIGRLEEDEYVNEDDETAELGESVSNLNKENALVLNGNDHKEDRPPNSVVVKEDDADVLADVKQMAAAAAAAGQAISAFENELRPIDRYAIRFLELWDPIIDKTALESEVRIEDTEWELDRIEKYKEEMEAEIDEDEEPLVYESWDADFATMAYRQQVEALAQHQLMEELEYEARLKEAEEEACDSKKTTPGDLKPKPKKKPKKAKFKSLKKGSLTSGLKPVKEESQAEPMNIDDEDITGLEFVSPNSSMQKKRKSKATTDGEEKRLKKSKKSKRDPPDIYVSDLESNALVVQYEHAESKTSESLVDLEQKTAGRGKMGGKISITPMPVKRIWTIKPEKMRKGNHWSKDCIPSADFWLAQEDAILCAVVHEYGPNWSLVSDILNSMTAGGSYRGRYRHPVHCCERFRELFQKNVLSMDNANNEKAITPGSGKALLKVTEDNIRMLLNVASEQANRELLLQKHFFALLSSAWKVASHVDRRQNPTPTCNGLYIIDQSLFTSMGQPSQNSLKKSSERVPFTNLVQSKKLVAAALDDSTTGQVNDRVILPNQGEGLPMSADKLDITLEFPKEESDVLALFPSVINLSIHGTDPTPSLSKQTGDGFKTCLFMAENRFREATRICEEDVSGWASSAFPTSDARSRPGSRIQSSGKQKSSISDSAKPSRSKSKRASIDASEMHHHQADSIVQSVPSLKDLRFDLTSFTTDEIGLTAVDTCFAFDLNVESSWEMEGVGMIPHDYVTGLISDLDDCTTFPEYTDIR* 2040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g0239 2039 CDD SF2_C_SNF 1041 1176 - -
Vra8g0239 2039 Pfam Myb-like DNA-binding domain 1638 1703 - -
Vra8g0239 2039 MobiDBLite consensus disorder prediction 1910 1941 - -
Vra8g0239 2039 MobiDBLite consensus disorder prediction 418 447 - -
Vra8g0239 2039 MobiDBLite consensus disorder prediction 1 33 - -
Vra8g0239 2039 Pfam HSA domain 27 93 IPR014012 -
Vra8g0239 2039 Coils Coil 1269 1289 - -
Vra8g0239 2039 Pfam SNF2-related domain 529 801 IPR000330 GO:0005524|GO:0140658
Vra8g0239 2039 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 524 689 IPR014001 -
Vra8g0239 2039 SMART helicmild6 1082 1165 IPR001650 -
Vra8g0239 2039 SMART bromneu2 23 94 IPR014012 -
Vra8g0239 2039 MobiDBLite consensus disorder prediction 1462 1562 - -
Vra8g0239 2039 Pfam Helicase conserved C-terminal domain 1053 1165 IPR001650 -
Vra8g0239 2039 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 736 1221 IPR027417 -
Vra8g0239 2039 SMART ultradead3 508 701 IPR014001 -
Vra8g0239 2039 Coils Coil 1443 1463 - -
Vra8g0239 2039 MobiDBLite consensus disorder prediction 274 447 - -
Vra8g0239 2039 Gene3D - 1621 1695 - -
Vra8g0239 2039 PANTHER HELICASE SRCAP 3 1889 - -
Vra8g0239 2039 MobiDBLite consensus disorder prediction 152 214 - -
Vra8g0239 2039 MobiDBLite consensus disorder prediction 1942 1960 - -
Vra8g0239 2039 ProSiteProfiles HSA domain profile. 22 94 IPR014012 -
Vra8g0239 2039 SUPERFAMILY Homeodomain-like 1636 1696 IPR009057 -
Vra8g0239 2039 CDD DEXQc_SRCAP 512 734 - -
Vra8g0239 2039 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1056 1206 IPR001650 -
Vra8g0239 2039 MobiDBLite consensus disorder prediction 366 409 - -
Vra8g0239 2039 Coils Coil 1393 1413 - -
Vra8g0239 2039 MobiDBLite consensus disorder prediction 285 301 - -
Vra8g0239 2039 MobiDBLite consensus disorder prediction 189 214 - -
Vra8g0239 2039 Gene3D - 481 757 IPR038718 -
Vra8g0239 2039 MobiDBLite consensus disorder prediction 1462 1477 - -
Vra8g0239 2039 MobiDBLite consensus disorder prediction 310 330 - -
Vra8g0239 2039 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 487 734 IPR027417 -
Vra8g0239 2039 MobiDBLite consensus disorder prediction 156 188 - -
Vra8g0239 2039 Gene3D - 758 814 - -
Vra8g0239 2039 MobiDBLite consensus disorder prediction 339 365 - -
Vra8g0239 2039 PANTHER HELICASE SRCAP-RELATED 3 1889 - -
Vra8g0239 2039 MobiDBLite consensus disorder prediction 1910 1965 - -
Vra8g0239 2039 Gene3D - 1025 1271 IPR027417 -
Vra8g0239 2039 MobiDBLite consensus disorder prediction 1535 1562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g0239 Vra-Chr8 2935484 2953995 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g0239 532 804 RAD5 or RAD16-like Gene Family AT5G43530 29.814 4.23e-28 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vra8g0239 SNF2_N 8.2e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g0239 - - gmx:100794898 3468.71